metaRE

R package for motif discovery via meta-analysis of microarrays and RNA-Seq

System requirements

• R >= 3.3.2
• Compiler with C++11 support

Installation

1. Install Bioconductor:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite()

2. Install required packages:

install.packages(c('Rcpp',  'BH', 'futile.logger', 'foreach'))
biocLite(c('limma', 'edgeR', 'GEOquery'))

3. Download metaRE:

git clone https://github.com/cheburechko/metaRE

4. Install metaRE: From console

R CMD INSTALL [path/to/package]

or from R using devtools

install.packages('devtools')
devtools::install('[path/to/package]')