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Switching to voila #95

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Switching to voila #95

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52f37e9
Switching to voila
kmader Sep 19, 2019
9349412
replacing the apps/appmode with voila
kmader Sep 19, 2019
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4 changes: 2 additions & 2 deletions README.md
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Expand Up @@ -17,8 +17,8 @@ The focus of the project is to make acquiring more training data as easy as poss

Here we have a demo chest X-Ray task where the annotation and viewing of a sample dataset can be done entirely with these tools.

[![Binder Annotation Tool](https://img.shields.io/badge/launch-annotation_tool-red.svg)](https://mybinder.org/v2/gh/chestrays/jupyanno/master?urlpath=%2Fapps%2Fnotebooks%2Fanno_app.ipynb%3Fuser%3Drandom_githubber)
[![Binder Dashboard Tool](https://img.shields.io/badge/launch-dashboard-blue.svg)](https://mybinder.org/v2/gh/chestrays/jupyanno/master?urlpath=%2Fapps%2Fnotebooks%2Fdashboard.ipynb%3Fuser%3Drandom_githubber)
[![Binder Annotation Tool](https://img.shields.io/badge/launch-annotation_tool-red.svg)](https://mybinder.org/v2/gh/chestrays/jupyanno/master?urlpath=%2Fvoila%2Frender%2Fnotebooks%2Fanno_app.ipynb%3Fuser%3Drandom_githubber)
[![Binder Dashboard Tool](https://img.shields.io/badge/launch-dashboard-blue.svg)](https://mybinder.org/v2/gh/chestrays/jupyanno/master?urlpath=%2Fvoila%2Frender%2Fnotebooks%2Fdashboard.ipynb%3Fuser%3Drandom_githubber)
[![Google Sheets Results](https://img.shields.io/badge/show-sheets-green.svg)](https://docs.google.com/spreadsheets/d/1T02tRhe3IUUHYsMchc7hmH8nVI3uR0GffdX1PNxKIZA/edit#gid=1178875150)

[![Pneumonia Sheets Results](https://img.shields.io/badge/show-pneumonia_sheets-green.svg)](https://docs.google.com/spreadsheets/d/1JUCLX_17JIGit0Nk4wphgTHlmji9u9PYPmyf_9Wscvg/edit#gid=1062358074)
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5 changes: 3 additions & 2 deletions binder/environment.yml
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Expand Up @@ -17,8 +17,6 @@ dependencies:
- SimpleITK
- scikit-image<=0.20
- scikit-learn<=0.20
- nbserverproxy
- appmode
- jupyter_dashboards
- pip:
- plotly
Expand All @@ -28,3 +26,6 @@ dependencies:
- cloudpickle
- fileupload
- git+https://github.com/chestrays/cornerstone_widget
- voila
- voila-material
- requests
3 changes: 2 additions & 1 deletion setup.py
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Expand Up @@ -12,7 +12,8 @@
author='ChestRays Team',
packages=['jupyanno'],
install_requires=['numpy', 'pandas', 'notebook', 'ipywidgets',
'seaborn', 'pillow', 'beautifulsoup4', 'pydicom'],
'seaborn', 'pillow', 'beautifulsoup4', 'pydicom',
'requests'],
extras_require={
'plots': ["matplotlib", "plotly", "cornerstone_widget"]
}
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