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DESCRIPTION
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DESCRIPTION
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Package: epiphy
Type: Package
Title: Analysis of Plant Disease Epidemics
Version: 0.5.0.9000
Authors@R: c(
person("Christophe", "Gigot", email = "ch.gigot@gmail.com",
role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-1748-2902")),
person("Adam H.", "Sparks", role = "ctb"),
person("Katrin", "Leinweber", role = "ctb")
)
Description: A toolbox to make it easy to analyze plant disease epidemics. It
provides a common framework for plant disease intensity data recorded over
time and/or space. Implemented statistical methods are currently mainly
focused on spatial pattern analysis (e.g., aggregation indices, Taylor and
binary power laws, distribution fitting, SADIE and 'mapcomp' methods). See
Laurence V. Madden, Gareth Hughes, Franck van den Bosch (2007)
<doi:10.1094/9780890545058> for further information on these methods.
Several data sets that were mainly published in plant disease epidemiology
literature are also included in this package.
License: MIT + file LICENSE
URL: https://github.com/chgigot/epiphy, https://chgigot.github.io/epiphy/
BugReports: https://github.com/chgigot/epiphy/issues
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
LinkingTo: Rcpp
Depends:
R (>= 4.0)
Imports:
stats,
methods,
utils,
grDevices,
ggplot2,
transport,
msm,
pbapply,
Rcpp
Suggests:
magrittr,
dplyr,
tidyr,
spdep,
emdist,
vegan,
MASS,
emdbook,
knitr,
rmarkdown
Collate:
'RcppExports.R'
'betabinom.R'
'data.R'
'utils.R'
'mle-factory.R'
'epiphy.R'
'intensity-classes.R'
'distr-fitting.R'
'indices.R'
'mapcomp.R'
'power-law.R'
'sadie.R'
'spatial-hier.R'
VignetteBuilder: knitr