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Added complexes to the database, rebuilt a modern Neo4j interface and significance calculation engine

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@chiffa chiffa released this 22 Oct 21:21
· 206 commits to master since this release
  • Added IntAct complex database as a data source
  • Modernized Neo4j DB interface.
  • Unsupported Java version, bulbs library, and neo4j versions are no more needed.
  • Removed dependency on 14.04 or earlier Ubuntu builds.
  • Added Gene Identifier overlap conflict resolution
  • Corrected a Tax ID parsing bug in Uniprot parser
  • Corrected a GeneName parsing bug in Uniprot parser
  • Corrected a Cross-Reference tag parsing bug in Uniprot parser
  • Updated dockerfile
  • Created docker compose file
  • Significance calculation now uses Extreme Limit theory (Gumbel Distribution)
  • published on Dockerhub
  • published on pypi