Test flexsurv commit

.Rbuildignore

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+TODO
+\.Rhistory
+\.Rprofile

.Rbuildignore~

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+TODO
+\.Rhistory

.Rhistory

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+library(Survival)
+library(survival)
+?Surv
+Surv(1:10, 2:11, c(0,0,0,0,rep(1,6)))
+str(Surv(1:10, 2:11, c(0,0,0,0,rep(1,6))))
+29 * 0.69
+29 * 0.64

.Rinstignore

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+TODO
+\.Rhistory

Changelog

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+-*- text -*-
+
+See "inst/NEWS" in source package, or "NEWS" in binary package, for changes

Changelog~

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+-*- text -*-
+
+See "inst/NEWS" for changes

DESCRIPTION

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+Package: flexsurv
+Type: Package
+Title: Flexible parametric survival models
+Version: 0.4
+Date: 2014-07-15
+Author: Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>
+Maintainer: Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>
+Description: Flexible parametric models for time-to-event data, including the Royston-Parmar spline model, generalized gamma and generalized F distributions.  Easily extensible to fit user-defined parametric distributions.
+License: GPL (>= 2)
+Depends: survival
+Imports: muhaz,mvtnorm
+Suggests: eha,mstate,numDeriv,testthat,msm
+LazyLoad: yes
+LazyData: yes

DESCRIPTION~

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+Package: flexsurv
+Type: Package
+Title: Flexible parametric survival models
+Version: 0.4
+Date: 2014-07-15
+Author: Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>
+Maintainer: Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>
+Description: Flexible parametric models for time-to-event data, including the Royston-Parmar spline model, generalized gamma and generalized F distributions.  Easily extensible to fit user-defined parametric distributions.
+License: GPL (>= 2)
+Depends: survival
+Imports: muhaz,mvtnorm
+Enhances: mstate
+Suggests: eha,mstate,numDeriv,testthat,msm
+LazyLoad: yes
+LazyData: yes

NAMESPACE

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+export(
+dgenf,
+dgenf.orig,
+dgengamma,
+dgengamma.orig,
+dgompertz,
+dsurvspline,
+flexsurvreg,
+flexsurvspline,
+hexp,
+Hexp,
+hgamma,
+Hgamma,    
+hgenf,
+Hgenf,
+hgenf.orig,
+Hgenf.orig,
+hgengamma,
+Hgengamma,
+hgengamma.orig,
+Hgengamma.orig,
+hgompertz,
+Hgompertz,
+hlnorm,    
+Hlnorm,    
+hsurvspline,
+Hsurvspline,
+hweibull,    
+Hweibull,    
+lines.flexsurvreg,
+msfit.flexsurvreg,    
+normboot.flexsurvreg,
+pgenf,
+pgenf.orig,
+pgengamma,
+pgengamma.orig,
+pgompertz,
+psurvspline,
+plot.flexsurvreg,
+qgeneric,
+qgenf,
+qgenf.orig,
+qgengamma,
+qgengamma.orig,
+qgompertz,
+qsurvspline,
+rgenf,
+rgenf.orig,
+rgengamma,
+rgengamma.orig,
+rgompertz,
+summary.flexsurvreg,
+unroll.function
+)
+
+importFrom(graphics, plot)
+importFrom(survival, Surv)
+importFrom(survival, survfit)
+importFrom(muhaz, muhaz)
+importFrom(mvtnorm, rmvnorm)
+
+S3method(print, flexsurvreg)
+S3method(plot, flexsurvreg)
+S3method(lines, flexsurvreg)
+S3method(summary, flexsurvreg)
+S3method(vcov, flexsurvreg)
+S3method(logLik, flexsurvreg)
+S3method(model.frame, flexsurvreg)
+S3method(model.matrix, flexsurvreg)

NAMESPACE~

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+export(
+dgenf,
+dgenf.orig,
+dgengamma,
+dgengamma.orig,
+dgompertz,
+dsurvspline,
+flexsurvreg,
+flexsurvspline,
+hexp,
+Hexp,
+hgamma,
+Hgamma,    
+hgenf,
+Hgenf,
+hgenf.orig,
+Hgenf.orig,
+hgengamma,
+Hgengamma,
+hgengamma.orig,
+Hgengamma.orig,
+hgompertz,
+Hgompertz,
+hlnorm,    
+Hlnorm,    
+hsurvspline,
+Hsurvspline,
+hweibull,    
+Hweibull,    
+lines.flexsurvreg,
+msfit,    
+normboot.flexsurvreg,
+pgenf,
+pgenf.orig,
+pgengamma,
+pgengamma.orig,
+pgompertz,
+psurvspline,
+plot.flexsurvreg,
+qgeneric,
+qgenf,
+qgenf.orig,
+qgengamma,
+qgengamma.orig,
+qgompertz,
+qsurvspline,
+rgenf,
+rgenf.orig,
+rgengamma,
+rgengamma.orig,
+rgompertz,
+summary.flexsurvreg,
+unroll.function
+)
+
+importFrom(graphics, plot)
+importFrom(survival, Surv)
+importFrom(survival, survfit)
+importFrom(muhaz, muhaz)
+importFrom(mvtnorm, rmvnorm)
+
+S3method(print, flexsurvreg)
+S3method(plot, flexsurvreg)
+S3method(lines, flexsurvreg)
+S3method(summary, flexsurvreg)
+S3method(vcov, flexsurvreg)
+S3method(logLik, flexsurvreg)
+S3method(model.frame, flexsurvreg)
+S3method(model.matrix, flexsurvreg)
+S3method(msfit, default)
+S3method(msfit, flexsurvreg)

R/.Rhistory

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+psi
+psigamma
+?psigamma
+?with
+hexp(1, 2)
+?with
+is.vector(matrix(1:4,nrow=2))
+is.matrix(matrix(1:4,nrow=2))
+setwd("../../tests")
+summary(sp, X=rep(0,5))
+summary(sp, X=rep(0,4))
+summary(sp, X=rep(0,4))
+debug(summary.flexsurvreg)
+summary(sp, X=rep(0,4))
+X
+Q
+summary.fl
+summary.flexsurvreg
+summary(sp, X=rep(0,4))
+summary(sp, X=rep(0,5))
+summary(sp, X=matrix(rep(0,5),nrow=1))
+summary(sp, X=matrix(rep(0,5),nrow=2))
+summary(sp, X=matrix(rep(0,10),nrow=2))
+identical(1:2, 1:4)
+identical(1:4, 1:4)
+?rm
+ls()
+x <- 1
+x2 <- 2
+y <- 3
+x34 <- 4
+ls("x*")
+ls
+ls()
+?ls
+ls(pattern="x.*")
+ls(pattern="a.*")
+ls(pattern="g.*")
+rm(list=ls(pattern="g.*"))
+rm(list=ls("foo"))
+?ls
+ls(pattern="^x34$")
+ls(pattern="$x34^")
+x <- NULL
+is.function(x$d)
+exists(x$d)
+y
+foo()
+y
+x <- list(1:3,1:2,1:4)
+Reduce("+", x)
+?Reduce
+cumsum(sapply(x,length))
+terms(form)
+?tersm
+?terms
+?terms.object
+grep(pattern, attr(terms(formula), "term.labels"))
+grep(pattern, attr(terms(form), "term.labels"))
+?gsub
+rm(list=ls())
+labs
+f2
+labs
+labs
+any(labs)
+I
+shape
+scale