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index.html
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<!DOCTYPE HTML>
<html lang="en">
<head>
<title></title>
<script src="js/Scribl.min.js"></script>
<!-- <script src="../Scribl/src/Scribl.class.js" ></script>
<script src="../Scribl/src/Scribl.js" ></script>
<script src="../Scribl/src/Scribl.track.js" ></script>
<script src="../Scribl/src/Scribl.lane.js" ></script>
<script src="../Scribl/src/Scribl.events.js" ></script>
<script src="../Scribl/src/Scribl.utils.js" ></script>
<script src="../Scribl/src/Scribl.svg.js" ></script>
<script src="../Scribl/src/Scribl.glyph.js" ></script>
<script src="../Scribl/src/glyph/Scribl.blockarrow.js" ></script>
<script src="../Scribl/src/glyph/Scribl.arrow.js" ></script>
<script src="../Scribl/src/glyph/Scribl.rect.js" ></script>
<script src="../Scribl/src/glyph/Scribl.line.js" ></script>
<script src="../Scribl/src/glyph/Scribl.complex.js" ></script> -->
<script src="http://ajax.googleapis.com/ajax/libs/jquery/1.4/jquery.min.js"></script>
<script src="js/mColorPicker_min.js"></script>
<!-- <link href="http://ajax.googleapis.com/ajax/libs/jqueryui/1.8/themes/base/jquery-ui.css" rel="stylesheet" type="text/css"/> -->
<link href='http://fonts.googleapis.com/css?family=Amaranth:bold' rel='stylesheet' type='text/css'>
<!-- <link href='http://fonts.googleapis.com/css?family=Gruppo' rel='stylesheet' type='text/css'> -->
<link rel="stylesheet" type="text/css" href="css/jquery-ui-1.8.13.redmond.css" />
<link rel="stylesheet" type="text/css" href="css/figure-builder.css" />
<script src="js/jquery-ui.chase.min.js"></script>
<script src="js/jsdas.0.1.6.min.js" ></script>
<script type="text/javascript">
var activeSeqs = 0;
var mainChart;
$(document).ready(function() {
var canvas = document.getElementById('canvas');
canvas.width = getCanvasWidth();
document.getElementById('canvasList').width = getCanvasWidth()+15;
// alert(canvas.width);
mainChart = new Scribl(canvas, getChartWidth());
$("button").button();
$("#scaleSlider").slider( { min: 3, max: 30, value: 15, slide: function(event, ui){ redraw() } });
$("#shapeSlider").slider( { min: 1, max: 20, value: 6, slide: function(event, ui){ redraw() } });
$("#trackSlider").slider( { min: 1, max: 200, value: 13, slide: function(event, ui){ redraw() } });
$('#color1').bind('colorpicked', function () { redraw(); });
$('#color2').bind('colorpicked', function () { redraw(); });
$('#scaleShow').bind('click', function () { redraw(); });
loadUrlQuery();
});
function draw() {
mainChart.canvas.width = getCanvasWidth();
mainChart.laneSizes = 13;
mainChart.canvas.height = mainChart.getHeight();
document.getElementById('canvasList').width = getCanvasWidth()+15;
mainChart.draw();
var img = mainChart.canvas.toDataURL("image/png");
// Add link to download image
$("#export-image").attr('href', img);
}
function getDas(name, source, chromosome, type, min, max, display) {
// get DAS data
var url = source + '/features?segment=' + chromosome + ':' + min + "," + max + ';type=' + type;
if(display == "Expand")
JSDAS.features(url, function(response) { addFeatures(response, "Expand") });
else
JSDAS.features(url, function(response) { addFeatures(response, "Collapse") });
}
function addFeatures(response, display) {
// set width again in case window wasn't loaded completely
mainChart.width = getChartWidth();
var track;
if (display == 'Expand')
track = mainChart.addTrack();
else
track = mainChart.addTrack().addLane();
var features = response.GFF.SEGMENT[0].FEATURE;
if (!features) {
// TODO add an error fetching message
return;
}
// features.sort( function(a,b){ return(b.position - a.position); });
for (var i=0; i < features.length; i++) {
var f = features[i];
var start = parseInt(f.START.textContent);
var length = parseInt(f.END.textContent) - start;
if (f.ORIENTATION) {
orientation = f.ORIENTATION.textContent;
var glyph = track.addGene(start, length, orientation);
} else
var glyph = track.addFeature( new Rect( "rect", start, length) );
if (f.TYPE.textContent) glyph.name = f.TYPE.textContent;
if(f.LINK && f.LINK[0] && f.LINK[0].href) {
//glyph.onMouseover = f.TYPE.textContent + "\n" + f.LINK[0].textContent || f.LINK[0].href;
//glyph.onClick = f.LINK[0].href.replace(":8080", "");
}
}
activeSeqs--;
if(activeSeqs == 0)
draw();
}
function redraw() {
// changeable options
var roundness = $("#shapeSlider").slider( "option", "value" );
var laneSizes = $("#trackSlider").slider( "option", "value" );
var scaleSize = $("#scaleSlider").slider( "option", "value" );
var canvas = document.getElementById('canvas');
canvas.height = mainChart.getHeight() + 20;
// set new values
mainChart.glyph.roundness = roundness;
mainChart.laneSizes = parseInt(laneSizes);
mainChart.scale.font.size = scaleSize;
if(!$('#scaleShow').attr('checked'))
mainChart.scale.off = true;
else
mainChart.scale.off = false;
// assemble color
top_color = $('#color1').val();
bottom_color = $('#color2').val();
mainChart.gene.linearGradient = [top_color, bottom_color];
mainChart.redraw();
// Create image of mainChart1
var img = mainChart.canvas.toDataURL("image/png");
// Add link to download image
$("#export-image").attr('href', img);
}
function getCanvasWidth(){return($(window).width() * .60);}
function getChartWidth(){return ($(window).width() * .60 - 40); }
function jump() {
var jumpTo = parseInt($('#jump').val());
var range = parseInt($('#slider-range').slider('values',1) - $('#slider-range').slider('values',0));
var min = jumpTo - range/2;
var max = jumpTo + range/2;
slideMin = min - bufferSize;
slideMax = max + bufferSize;
$( "#slider-range" ).slider('option', 'max', slideMax);
$( "#slider-range" ).slider('option', 'min', slideMin);
redraw(min, max, true);
}
function getUrlQuerys(){
// get the current URL
var url = window.location.toString();
url = url.replace('#', '');
//get the parameters
url.match(/\?(.+)$/);
var params = RegExp.$1;
// split up the query string and store in an
// associative array
var params = params.split("&");
var queryStringList = {};
for(var i=0;i<params.length;i++) {
var tmp = params[i].split("=");
queryStringList[tmp[0]] = unescape(tmp[1]);
}
return (queryStringList);
}
function serializeToIframe() {
var iframeStr = '<iframe width="500" height="315" style="border:1px solid rgb(220,220,220); border-radius: 4px" frameborder="0" scrolling="no" marginheight="0" marginwidth="0" src="';
iframeStr += serializeToUrl();
iframeStr += '&embed=true"'
iframeStr += '></iframe>';
iframeStr += '<br/><small>Powered by <a href="http://chmille4.github.com/Scribl" style="color:#0000FF;text-align:left">Scribl</a></small>';
return iframeStr;
}
function serializeToUrl() {
var checkboxes = $('#source-list').find('input');
// get urls
var sourceUrls = [];
checkboxes.each( function(index, value){sourceUrls.push(value.value)});
// get names
var sourceNames = [];
checkboxes.each( function(index, value){sourceNames.push(value.id.replace(/-input$/,''))});
// get types
var types = []
checkboxes.each( function(index,value){ types.push( checkboxes[index].getAttribute('data-type') ); } );
var trackOptions = [];
for(var i=0; i< sourceNames.length; i++){
var expandOption = sourceNames[i] + '-expand-option';
// check if source is being displayed
var menu = document.getElementById(expandOption);
if (menu)
trackOptions.push(menu.children[0].innerHTML)
else
trackOptions.push('none');
}
// get min, max, chromosome
var min = $('#slider-range').slider('values',0);
var max = $('#slider-range').slider('values',1);
var chr = $('#chromosome').val();
// construct query string
var queryStr = "?"
queryStr += "urls=" + sourceUrls.join(',');
queryStr += "&names=" + sourceNames.join(',');
queryStr += "&min=" + min;
queryStr += "&max=" + max;
queryStr += "&display=" + trackOptions.join(',');
queryStr += "&segment=" + chr;
queryStr += "&types=" + types.join(',');
return (getBaseURL() + queryStr);
}
function getBaseURL() {
var url = location.href; // entire url including querystring - also: window.location.href;
var baseURL = url.split('?')[0]
return baseURL;
}
function loadUrlQuery() {
//parse url querys (if any)
var querys = getUrlQuerys();
if (querys != "" && Object.keys(querys).length > 0 && Object.keys(querys)[0] != "" ) {
// parse query
var urls = querys['urls'].split(',');
var names = querys['names'].split(',');
var types = querys['types'].split(',');
var displays = querys['display'].split(',');
var chr = querys['segment'];
var min = parseInt(querys['min']);
var max = parseInt(querys['max'])
// get Das sources
for (var k=0; k < names.length; k++) {
if (displays[k] == 'Expand' || displays[k] == 'Collapse'){
activeSeqs++;
getDas(names[k], urls[k], chr, types[k], min, max, displays[k]);
}
}
}
}
</script>
</head>
<body>
<div id="content">
<div id="title">Figure Maker 1.0</div>
<div id='main'>
<div id='canvasHolder' style="float:left; width: 82%">
<div id="canvasList">
<canvas id='canvas'></canvas>
</div>
</div>
<div style="float:right; width: 17%">
<div style="float: left ">
<div id="sliderControls" class="side-control">
<span class="title">Features</span><br/>
<span class="field">Shape</span><br/>
<div id="shapeSlider" class="slider"></div>
<br/><span class="field">Size</span><br/>
<div id="trackSlider" class ="slider"></div>
</div>
<div id="colors" class="side-control">
<span class="title">Colors</span><br/>
<span class="field">1</span><br/>
<input id="color1" type="color" value="rgb(155,193,255)"/><br/>
<span class="field">2</span><br/>
<input id="color2" type="color" value="rgb(63,128,205)" />
</div>
<div id="scaleControls" class="side-control">
<span class="title">Scale</span><br/>
<span class="field">Size</span><br/>
<div id="scaleSlider" class="slider"></div>
<br/><br/><span class="field">Show</span> <input id="scaleShow" type="checkbox" checked="true"/><br/>
</div>
<div id="export" class="side-control">
<span class="title">Export As</span><br/>
<span class="field"><button>Link</button> <a id='export-image'><button>Image</button></a></span>
</div>
</div>
</div>
</div>
<div id="footer">
<div style="width=30%;margin-left:auto; margin-right:auto; margin-top: 10px">
Powered By <a href="http://chmille4.github.com/Scribl/">Scibl</a>
</div>
<div style="float:right; margin-right:20px; margin-top:-6px">© <a href="http://github.com/chmille4">Chase Miller</a> 2011</div>
</div>
</body>
</html>