Merge pull request #28 from sonyahanson/master

Making a few new ipython notebooks to play with new spectrum and competition assay data
choderalab · Jan 25, 2016 · 10ecb5d · 10ecb5d
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diff --git a/examples/Fluorescence_Inhibitor_Spectra/2015-12-15/.DS_Store b/examples/Fluorescence_Inhibitor_Spectra/2015-12-15/.DS_Store
diff --git a/examples/Fluorescence_Inhibitor_Spectra/2015-12-16/.DS_Store b/examples/Fluorescence_Inhibitor_Spectra/2015-12-16/.DS_Store
diff --git a/examples/Fluorescence_Inhibitor_Spectra/2015-12-17/.DS_Store b/examples/Fluorescence_Inhibitor_Spectra/2015-12-17/.DS_Store
diff --git a/examples/Fluorescence_Inhibitor_Spectra/2015-12-18/.DS_Store b/examples/Fluorescence_Inhibitor_Spectra/2015-12-18/.DS_Store
diff --git a/examples/README.md b/examples/README.md
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 # AssayTools Examples
 
 ## Manifest
-* `fluorescence-binding-assay/` - fitting the results of a fluorescence assay, where a ligand that changes fluorescence upon binding is titrated into a protein solution
-* `competition-assay-modeling/` - modeling a fluorescence ligand competition assay
-  * See the [IPython notebook online](http://nbviewer.ipython.org/github/choderalab/assaytools/blob/master/examples/competition-assay-modeling/competition-assay-modeling.ipynb).
-* `xml2png/` - illustrate the use of the xml2png tool
-* `xml2png4scans/` - illustrate the use of the xml2png4scans tool
-* `hsa/` - human serum albumin (HSA) fluorescence binding measurements
-
+* `ipynbs/` - IPython notebook examples
+  * `data-analysis/` - examples of fluorescence inhibitor assay analyses
+    * `fluorescence-binding-assay/` - fitting the results of a fluorescence assay, where a ligand that changes fluorescence upon binding is titrated into a protein solution
+    * `hsa/` - human serum albumin (HSA) fluorescence binding measurements
+  * `models/` - examples of pre-experiment modelling of fluorescence inhibitor assays
+    * `competition-assay-modeling/` - modeling a fluorescence ligand competition assay
+      * See the [IPython notebook online](http://nbviewer.ipython.org/github/choderalab/assaytools/blob/master/examples/competition-assay-modeling/competition-assay-modeling.ipynb).
+* `scripts/` - simple examples of scripts
+  * `xml2png/` - illustrate the use of the xml2png tool
+  * `xml2png4scans/` - illustrate the use of the xml2png4scans tool
diff --git a/...ynbs/fluorescence-binding-assay/README.md → ...nbs/data-analysis/binding-assay/README.md b/...ynbs/fluorescence-binding-assay/README.md → ...nbs/data-analysis/binding-assay/README.md
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diff --git a/...-assay/p38 analysis (no absorbance).ipynb → ...-assay/p38 analysis (no absorbance).ipynb b/...-assay/p38 analysis (no absorbance).ipynb → ...-assay/p38 analysis (no absorbance).ipynb
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diff --git a/examples/ipynbs/data-analysis/competition/data/Abl_Gef_20160115_170134.xml b/examples/ipynbs/data-analysis/competition/data/Abl_Gef_20160115_170134.xml
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diff --git a/...HSA fluorescence analysis - ligand1.ipynb → ...HSA fluorescence analysis - ligand1.ipynb b/...HSA fluorescence analysis - ligand1.ipynb → ...HSA fluorescence analysis - ligand1.ipynb
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diff --git a/examples/ipynbs/hsa/README.md → examples/ipynbs/data-analysis/hsa/README.md b/examples/ipynbs/hsa/README.md → examples/ipynbs/data-analysis/hsa/README.md
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