nrep<1 error in analysis.funcs

[stranda]

Hi All,

Error in if (nrep < 1) keep.null <- FALSE : argument is of length zero

I get this when running rmetasim and microsatellite loci. It seems to be occurring in the analysis funcs, but I can't actually find this test in any of the codebase. Must be a result of class conformation tests?

[EricArcher]

This looks like a strataG thing. Would you make sure you've pulled the latest version and let me know if you get it again.

[stranda]

Have you made changes in the past two hours? I pulled new strataG, apex, hierfstat, and swfscMisc two hours ago.

[EricArcher]

no I haven't, so I should be able to find and fix this. I'll take a quick
look after the telcon.

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On Wed, Mar 9, 2016 at 12:56 PM, stranda notifications@github.com wrote:

Have you made changes in the past two hours? I pulled new strataG, apex,
hierfstat, and swfscMisc two hours ago.

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#28 (comment)
.

[stranda]

I've added a selection in the ui for this parameter (general parameters tab). It is set to 1 by default. No longer dies

[smhoban]

Awesome!

On Wed, Mar 16, 2016 at 2:42 PM, stranda notifications@github.com wrote:

I've added a selection in the ui for this parameter (general parameters
tab). It is set to 1 by default. No longer dies

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#28 (comment)

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[EricArcher]

It should also work being set to 0 (no p-values calculated). I think I fixed strataG so it would have this behavior. NULL should produce the same result. I haven't sat down to set up the Shiny GUI recently, so could someone check this out?

[christianparobek]

I think this is related to a problem I'm running into (just pulled latest commits, but this was a problem before too). Under General Conf, in the "Number of simulation reps box" (this is what you all are talking about in this issue, right?), you're right Eric, I can now set it to 0, and it's fine with that. However, anytime that there is not a number in the box (for example, I delete the 1 so I can type 2), the interface crashes with this error:

Warning: Error in <Anonymous>: assignment of an object of class “logical” is not valid for @‘num.reps’ in an object of class “skeleSim.params”; is(value, "intOrNum") is not TRUE
Stack trace (innermost first):
    65: <Anonymous>
    64: observeEventHandler [make-skelesim-class.R#38]
     2: runApp
     1: skeleSimGUI

[EricArcher]

Christian, this is the skeleSim@num.rep slot which sets the number of simulation replicates. For the sake of clarity, I have changed it to @num.sim.rep in the skeleSim class and the code it is referenced in. I also wrapped it in as.numeric() to keep a blank from being treated as a logical in the shiny GUI. I don't get an error now.