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Tweak numbers of spans in about-bam-indexer-small-file tests that cam…
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…e from #69 (comment)
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ayamada committed Apr 28, 2017
1 parent d5d350f commit 878f0fd
Showing 1 changed file with 5 additions and 4 deletions.
9 changes: 5 additions & 4 deletions test/cljam/t_bam_indexer.clj
Expand Up @@ -71,10 +71,11 @@
(with-open [r (bam/reader temp-file-sorted)]
;; Random read with different number of spans.
(are [?param ?counts] (= (count (io/read-alignments r ?param)) ?counts)
{:chr "chr1" :start 23000000 :end 25000000 :depth :deep} 14858
{:chr "chr1" :start 23000000 :end 24500000 :depth :deep} 11424
{:chr "chr1" :start 23000000 :end 24000000 :depth :deep} 10010
{:chr "chr1" :start 23000000 :end 23500000 :depth :deep} 3806
{:chr "chr1" :start 23000000 :end 23001000 :depth :deep} 46 ;; 1 span
{:chr "chr1" :start 24900000 :end 24902000 :depth :deep} 3 ;; 2 spans
{:chr "chr1" :start 24000000 :end 24001000 :depth :deep} 6 ;; 3 spans
{:chr "chr1" :start 23260000 :end 23268650 :depth :deep} 58 ;; 4 spans
{:chr "chr1" :start 23430000 :end 23470000 :depth :deep} 55 ;; 5 spans
{:chr "*"} 0)))))

(deftest-slow about-bam-indexer-medium-file
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