Change files for testing dedupe

chrovis · Apr 24, 2017 · d819a5e · d819a5e
1 parent 2a7cebd
commit d819a5e
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Showing 6 changed files with 6 additions and 6 deletions.
diff --git a/test-resources/dedupe_after.bam b/test-resources/dedupe_after.bam
diff --git a/test-resources/dedupe_before.bam b/test-resources/dedupe_before.bam
diff --git a/test-resources/dedupe_before.bam.bai b/test-resources/dedupe_before.bam.bai
diff --git a/test-resources/small.deduped.bam b/test-resources/small.deduped.bam
diff --git a/test/cljam/t_common.clj b/test/cljam/t_common.clj
@@ -104,10 +104,12 @@
 (def test-bam-file "test-resources/test.bam")
 (def test-sorted-bam-file "test-resources/test.sorted.bam")
 (def small-bam-file "test-resources/small.bam")
-(def small-deduped-bam-file "test-resources/small.deduped.bam")
 (def medium-bam-file "test-resources/medium.bam")
 (def large-bam-file (cavia/resource mycavia "large.bam"))
 
+(def dedupe-before-bam-file "test-resources/dedupe_before.bam")
+(def dedupe-after-bam-file "test-resources/dedupe_after.bam")
+
 ;; ### BAM index files
 
 (def test-bai-file "test-resources/test.sorted.bam.bai")

diff --git a/test/cljam/t_dedupe.clj b/test/cljam/t_dedupe.clj
@@ -8,11 +8,9 @@
 (deftest simple-pe-dedupe
   (with-before-after {:before (prepare-cache!)
                       :after (clean-cache!)}
-    (let [in-file small-bam-file
-          out-file (str temp-dir "/deduped.bam")
-          controlled-result-file small-deduped-bam-file]
-      (is (not-throw? (dedupe/dedupe in-file out-file)))
-      (is (same-bam-file? out-file controlled-result-file)))))
+    (let [out-file (str temp-dir "/deduped.bam")]
+      (is (not-throw? (dedupe/dedupe dedupe-before-bam-file out-file)))
+      (is (same-bam-file? out-file dedupe-after-bam-file)))))
 
 (deftest simple-pe-dedupe-xform
   (is (= (into #{}