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circ_na_map.py
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circ_na_map.py
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#!/usr/bin/python
import sys, copy
sys.path.append('/Applications/Inkscape.app/Contents/Resources/extensions')
import inkex, simpletransform
import json
import os
import subprocess
from lxml import etree
def convert_to_cairo(num):
bits8 = int('11111111', base=2)
alpha = ((num) & bits8 )
blue = ((num >> 8) & bits8)
green = ((num >> 16) & bits8)
red = ((num >> 24) & bits8)
return "{}@{}@{}@{}".format(red, green, blue, alpha)
class Plasmid_fraction(inkex.Effect):
def __init__(self, settings_path="settings.json"):
inkex.Effect.__init__(self)
self.OptionParser.add_option('--name')
self.OptionParser.add_option('--r_type', action = 'store', dest = 'r_type', type = 'int', default = 0)
self.OptionParser.add_option('--r_share', action = 'store', dest = 'r_share', type = 'int', default = 10)
self.OptionParser.add_option('--r_width', action = 'store', dest = 'r_width', type = 'float', default = 20)
self.OptionParser.add_option('--fill_color', action = 'store', dest = 'fill_color', type = 'int', default = 0)
def effect(self):
with open("settings.json") as inp:
settings = json.load(inp)
python3_path = settings['python3_path']
tempfilename = 'circ_map.svg'
vals = [python3_path, "dirty_hack.py", tempfilename]
for key, value in self.options.__dict__.items():
if "color" in key:
value = convert_to_cairo(value)
if key in ("selected_nodes", "ids", "tab", "name"):
continue
vals.append("--{}".format(key))
vals.append(str(value))
with open(u"C:/Users/user/AppData/Roaming/inkscape/extensions/log.txt", "a") as out:
out.write('Running\n')
subprocess.check_call(['C:\\Users\\user\\Anaconda3\\condabin\\activate.bat', 'base', '&'] + vals, stderr=out, shell=True)
t = etree.parse(tempfilename)
self.current_layer.extend(t.getroot())
os.remove(tempfilename)
if __name__ == "__main__":
effect = Plasmid_fraction()
effect.affect()