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Two Voronoi Otsu Labelings, but one results in error #48

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psobolewskiPhD opened this issue Feb 13, 2022 · 1 comment
Open

Two Voronoi Otsu Labelings, but one results in error #48

psobolewskiPhD opened this issue Feb 13, 2022 · 1 comment

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@psobolewskiPhD
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The drop down in the Label widget has in the Operation list two entries for voronoi otsu labeling:
image
The top one: Voronoi-Otsu-labeling results in a long spinning beachball and error on macOS 12.1, napari 0.4.14:

2022-02-13 11:10:38.267 | INFO     | napari_pyclesperanto_assistant._gui._category_widget:call_op:120 - cle.voronoi_otsu_labeling (clesperanto)(..., 2.0, 2.0)
2022-02-13 11:10:38.650 | DEBUG    | napari_pyclesperanto_assistant._gui._category_widget:_show_result:219 - creating new layer for id: 5502808128
2022-02-13 11:11:02.776 | ERROR    | napari_pyclesperanto_assistant._gui._category_widget:gui_function:324 - An error has been caught in function 'gui_function', process 'MainProcess' (27274), thread 'MainThread' (4342056320):
Traceback (most recent call last):

  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/bin/napari", line 10, in <module>
    sys.exit(main())
    │   │    └ <function main at 0x12442c790>
    │   └ <built-in function exit>
    └ <module 'sys' (built-in)>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/napari/__main__.py", line 449, in main
    _run()
    └ <function _run at 0x12442c5e0>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/napari/__main__.py", line 338, in _run
    run(gui_exceptions=True)
    └ <function run at 0x12480ca60>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/napari/_qt/qt_event_loop.py", line 402, in run
    app.exec_()
    │   └ <built-in method exec_>
    └ <PyQt5.QtWidgets.QApplication object at 0x124fbddc0>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/magicgui/backends/_qtpy/widgets.py", line 646, in _emit_data
    self._event_filter.valueChanged.emit(self._qwidget.itemData(index))
    │    │             │                 │    │        │        └ 7
    │    │             │                 │    │        └ <built-in method itemData>
    │    │             │                 │    └ <PyQt5.QtWidgets.QComboBox object at 0x13169aee0>
    │    │             │                 └ <magicgui.backends._qtpy.widgets.ComboBox object at 0x1316907f0>
    │    │             └ <unbound PYQT_SIGNAL valueChanged(PyQt_PyObject)>
    │    └ <magicgui.backends._qtpy.widgets.EventFilter object at 0x13169a280>
    └ <magicgui.backends._qtpy.widgets.ComboBox object at 0x1316907f0>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/magicgui/widgets/_bases/value_widget.py", line 57, in _on_value_change
    self.changed.emit(value)
    │    │       │    └ 'Voronoi-Otsu-labeling (clesperanto)'
    │    │       └ <cyfunction SignalInstance.emit at 0x103049790>
    │    └ <SignalInstance 'changed' on ComboBox(value='Voronoi-Otsu-labeling (clesperanto)', annotation=<class 'str'>, name='op_name')>
    └ ComboBox(value='Voronoi-Otsu-labeling (clesperanto)', annotation=<class 'str'>, name='op_name')
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/magicgui/events.py", line 85, in _run_emit_loop
    cb(*args[:max_args])
    │   │     └ 0
    │   └ ('Voronoi-Otsu-labeling (clesperanto)',)
    └ <function ContainerWidget.insert.<locals>.<lambda> at 0x16c820e50>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/magicgui/widgets/_bases/container_widget.py", line 165, in <lambda>
    widget.changed.connect(lambda: self.changed.emit(self))
                                   │    │       │    └ <FunctionGui do_label(*, input0: napari.layers.base.base.Layer = <Image layer 'Image:0' at 0x14f5089d0>, op_name: str = 'Voro...
                                   │    │       └ <cyfunction SignalInstance.emit at 0x103049790>
                                   │    └ <SignalInstance 'changed' on <FunctionGui do_label(*, input0: napari.layers.base.base.Layer = <Image layer 'Image:0' at 0x14f...
                                   └ <FunctionGui do_label(*, input0: napari.layers.base.base.Layer = <Image layer 'Image:0' at 0x14f5089d0>, op_name: str = 'Voro...
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/magicgui/events.py", line 85, in _run_emit_loop
    cb(*args[:max_args])
    │   │     └ 0
    │   └ (<FunctionGui do_label(*, input0: napari.layers.base.base.Layer = <Image layer 'Image:0' at 0x14f5089d0>, op_name: str = 'Vor...
    └ <bound method FunctionGui._on_change of <FunctionGui do_label(*, input0: napari.layers.base.base.Layer = <Image layer 'Image:...
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/magicgui/widgets/_function_gui.py", line 221, in _on_change
    self()
    └ <FunctionGui do_label(*, input0: napari.layers.base.base.Layer = <Image layer 'Image:0' at 0x14f5089d0>, op_name: str = 'Voro...
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/magicgui/widgets/_function_gui.py", line 303, in __call__
    value = self._function(*bound.args, **bound.kwargs)
            │    │          │     │       │     └ <property object at 0x10301e130>
            │    │          │     │       └ <BoundArguments (input0=<Image layer 'Image:0' at 0x14f5089d0>, op_name='Voronoi-Otsu-labeling (clesperanto)', x=2.0, y=2.0, ...
            │    │          │     └ <property object at 0x10301e0e0>
            │    │          └ <BoundArguments (input0=<Image layer 'Image:0' at 0x14f5089d0>, op_name='Voronoi-Otsu-labeling (clesperanto)', x=2.0, y=2.0, ...
            │    └ <function make_gui_for_category.<locals>.gui_function at 0x147fe3040>
            └ <FunctionGui do_label(*, input0: napari.layers.base.base.Layer = <Image layer 'Image:0' at 0x14f5089d0>, op_name: str = 'Voro...
> File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/napari_pyclesperanto_assistant/_gui/_category_widget.py", line 324, in gui_function
    result, used_args = call_op(op_name, inputs, t_position, viewer, **kwargs)
                        │       │        │       │           │         └ {'x': 2.0, 'y': 2.0, 'z': 0.0, 'u': 0.0, 'v': 0.0, 'w': 0.0, 'a': False, 'b': False, 'c': False, 'k': '', 'l': '', 'm': ''}
                        │       │        │       │           └ Viewer(axes=Axes(visible=False, labels=True, colored=True, dashed=False, arrows=True), camera=Camera(center=(0.0, 126.5, 127....
                        │       │        │       └ None
                        │       │        └ [<Image layer 'Image:0' at 0x14f5089d0>]
                        │       └ 'Voronoi-Otsu-labeling (clesperanto)'
                        └ <function call_op at 0x14df454c0>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/napari_pyclesperanto_assistant/_gui/_category_widget.py", line 154, in call_op
    gpu_out = gpu_out.astype(int)
              │       └ <function OCLArray.astype at 0x14d91e700>
              └ cl.Array([[ 0,  0,  0, ..., 86, 86, 86],
                       [ 0,  0,  0, ..., 86, 86, 86],
                       [ 0,  0,  0, ..., 86, 86, 86],
                       ....
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier0/_pycl.py", line 148, in astype
    return copy(self, copied)
           │    │     └ cl.Array([[0, 0, 0, ..., 0, 0, 0],
           │    │              [0, 0, 0, ..., 0, 0, 0],
           │    │              [0, 0, 0, ..., 0, 0, 0],
           │    │              ...,
           │    │              [0, 0, ...
           │    └ cl.Array([[ 0,  0,  0, ..., 86, 86, 86],
           │             [ 0,  0,  0, ..., 86, 86, 86],
           │             [ 0,  0,  0, ..., 86, 86, 86],
           │             ....
           └ <function copy at 0x14d93c280>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier0/_plugin_function.py", line 71, in worker_function
    return function(*bound.args, **bound.kwargs)
           │         │     │       │     └ <property object at 0x10301e130>
           │         │     │       └ <BoundArguments (source=cl.Array([[ 0,  0,  0, ..., 86, 86, 86],
           │         │     │                [ 0,  0,  0, ..., 86, 86, 86],
           │         │     │                [ 0,  0,  0, .....
           │         │     └ <property object at 0x10301e0e0>
           │         └ <BoundArguments (source=cl.Array([[ 0,  0,  0, ..., 86, 86, 86],
           │                  [ 0,  0,  0, ..., 86, 86, 86],
           │                  [ 0,  0,  0, .....
           └ <function copy at 0x14d93c1f0>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier1/_copy.py", line 36, in copy
    execute(__file__, '../clij-opencl-kernels/kernels/copy_' + str(len(destination.shape)) + 'd_x.cl', 'copy_' + str(len(destination.shape)) + 'd', destination.shape, parameters)
    │       │                                                          │           │                                     │           │              │           │      └ {'dst': cl.Array([[0, 0, 0, ..., 0, 0, 0],
    │       │                                                          │           │                                     │           │              │           │               [0, 0, 0, ..., 0, 0, 0],
    │       │                                                          │           │                                     │           │              │           │               [0, 0, 0, ..., 0, 0, 0],
    │       │                                                          │           │                                     │           │              │           │               ...,
    │       │                                                          │           │                                     │           │              │           │              ...
    │       │                                                          │           │                                     │           │              │           └ (254, 256)
    │       │                                                          │           │                                     │           │              └ cl.Array([[0, 0, 0, ..., 0, 0, 0],
    │       │                                                          │           │                                     │           │                       [0, 0, 0, ..., 0, 0, 0],
    │       │                                                          │           │                                     │           │                       [0, 0, 0, ..., 0, 0, 0],
    │       │                                                          │           │                                     │           │                       ...,
    │       │                                                          │           │                                     │           │                       [0, 0, ...
    │       │                                                          │           │                                     │           └ (254, 256)
    │       │                                                          │           │                                     └ cl.Array([[0, 0, 0, ..., 0, 0, 0],
    │       │                                                          │           │                                              [0, 0, 0, ..., 0, 0, 0],
    │       │                                                          │           │                                              [0, 0, 0, ..., 0, 0, 0],
    │       │                                                          │           │                                              ...,
    │       │                                                          │           │                                              [0, 0, ...
    │       │                                                          │           └ (254, 256)
    │       │                                                          └ cl.Array([[0, 0, 0, ..., 0, 0, 0],
    │       │                                                                   [0, 0, 0, ..., 0, 0, 0],
    │       │                                                                   [0, 0, 0, ..., 0, 0, 0],
    │       │                                                                   ...,
    │       │                                                                   [0, 0, ...
    │       └ '/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier1/_copy.py'
    └ <function execute at 0x14d7d24c0>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier0/_execute.py", line 3, in execute
    return Backend.get_instance().get().execute(anchor, opencl_kernel_filename, kernel_name, global_size, parameters, prog, constants, image_size_independent_kernel_compilation, device)
           │       │                            │       │                       │            │            │           │     │          │                                          └ None
           │       │                            │       │                       │            │            │           │     │          └ None
           │       │                            │       │                       │            │            │           │     └ None
           │       │                            │       │                       │            │            │           └ None
           │       │                            │       │                       │            │            └ {'dst': cl.Array([[0, 0, 0, ..., 0, 0, 0],
           │       │                            │       │                       │            │                     [0, 0, 0, ..., 0, 0, 0],
           │       │                            │       │                       │            │                     [0, 0, 0, ..., 0, 0, 0],
           │       │                            │       │                       │            │                     ...,
           │       │                            │       │                       │            │                    ...
           │       │                            │       │                       │            └ (254, 256)
           │       │                            │       │                       └ 'copy_2d'
           │       │                            │       └ '../clij-opencl-kernels/kernels/copy_2d_x.cl'
           │       │                            └ '/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier1/_copy.py'
           │       └ <classmethod object at 0x14d594ca0>
           └ <class 'pyclesperanto_prototype._tier0._backends.Backend'>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier0/_opencl_backend.py", line 41, in execute
    return execute(anchor, opencl_kernel_filename, kernel_name, global_size, parameters, prog, constants, image_size_independent_kernel_compilation, device)
           │       │       │                       │            │            │           │     │          │                                          └ None
           │       │       │                       │            │            │           │     │          └ None
           │       │       │                       │            │            │           │     └ None
           │       │       │                       │            │            │           └ None
           │       │       │                       │            │            └ {'dst': cl.Array([[0, 0, 0, ..., 0, 0, 0],
           │       │       │                       │            │                     [0, 0, 0, ..., 0, 0, 0],
           │       │       │                       │            │                     [0, 0, 0, ..., 0, 0, 0],
           │       │       │                       │            │                     ...,
           │       │       │                       │            │                    ...
           │       │       │                       │            └ (254, 256)
           │       │       │                       └ 'copy_2d'
           │       │       └ '../clij-opencl-kernels/kernels/copy_2d_x.cl'
           │       └ '/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier1/_copy.py'
           └ <function execute at 0x17ea408b0>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier0/_opencl_execute.py", line 311, in execute
    prog = device.program_from_source("\n".join(defines))
           │      │                             └ ['#define MAX_ARRAY_SIZE 1000', '#define GET_IMAGE_WIDTH(image_key) image_size_ ## image_key ## _width', '#define GET_IMAGE_H...
           │      └ <functools._lru_cache_wrapper object at 0x14d8f5ae0>
           └ <Apple M1 on Platform: Apple (58 refs)>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier0/_device.py", line 26, in program_from_source
    return OCLProgram(src_str=source, dev=self)
           │                  │           └ <Apple M1 on Platform: Apple (58 refs)>
           │                  └ '#define MAX_ARRAY_SIZE 1000\n#define GET_IMAGE_WIDTH(image_key) image_size_ ## image_key ## _width\n#define GET_IMAGE_HEIGHT...
           └ <class 'pyclesperanto_prototype._tier0._program.OCLProgram'>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier0/_program.py", line 28, in __init__
    self.build(options=build_options)
    │    │             └ []
    │    └ <function Program.build at 0x14d8b8c10>
    └ <pyclesperanto_prototype._tier0._program.OCLProgram object at 0x131542280>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyopencl/__init__.py", line 536, in build
    self._prg, was_cached = self._build_and_catch_errors(
    │    │                  │    └ <function Program._build_and_catch_errors at 0x14d8b8ca0>
    │    │                  └ <pyclesperanto_prototype._tier0._program.OCLProgram object at 0x131542280>
    │    └ None
    └ <pyclesperanto_prototype._tier0._program.OCLProgram object at 0x131542280>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyopencl/__init__.py", line 584, in _build_and_catch_errors
    raise err
          └ RuntimeError(<pyopencl._cl._ErrorRecord object at 0x1315417b0>)

pyopencl._cl.RuntimeError: clBuildProgram failed: BUILD_PROGRAM_FAILURE - clBuildProgram failed: BUILD_PROGRAM_FAILURE - clBuildProgram failed: BUILD_PROGRAM_FAILURE

Build on <pyopencl.Device 'Apple M1' on 'Apple' at 0x1027f00>:

Compiler encountered an internal error
(options: -I /Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyopencl/cl)
(source saved as /var/folders/sy/y3_x27j14cxg3_vhycs6cr_h0000gn/T/tmp_yz2cknb.cl)

The bottom one voronoi_otsu_labeling works fine.
Should there be two in the menu?
@psobolewskiPhD psobolewskiPhD mentioned this issue Feb 13, 2022
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@haesleinhuepf
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Should there be two in the menu?

Some operations from clesperanto will show up twice in a transition period: Goal is to make the assistant independent from clesperanto. Apologies for the inconvenience.

The top one: Voronoi-Otsu-labeling results in a long spinning beachball and error on macOS 12.1, napari 0.4.14:

In my case (also on Mac M1) I get an empty image as result when calling this operation, but no error. I'm wondering what's different between your system an mine. See discussion in #49

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@haesleinhuepf @psobolewskiPhD