Connected component labeling returns error on macOS M1

[psobolewskiPhD]

Noticed this by accident with #48
The first Operation in the Label widget Connected component labeling results in long beachball and error on macOS 12.1, napari 0.14.0 and N-pycl-A 0.15.1 . The other Operations (including other two Connected component ones) work fine—with the exception of the duplicate voronoi-otsu noted in #48
Here's the error:

2022-02-13 11:18:14.286 | ERROR    | napari_pyclesperanto_assistant._gui._category_widget:gui_function:324 - An error has been caught in function 'gui_function', process 'MainProcess' (27274), thread 'MainThread' (4342056320):
Traceback (most recent call last):

  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/bin/napari", line 10, in <module>
    sys.exit(main())
    │   │    └ <function main at 0x12442c790>
    │   └ <built-in function exit>
    └ <module 'sys' (built-in)>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/napari/__main__.py", line 449, in main
    _run()
    └ <function _run at 0x12442c5e0>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/napari/__main__.py", line 338, in _run
    run(gui_exceptions=True)
    └ <function run at 0x12480ca60>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/napari/_qt/qt_event_loop.py", line 402, in run
    app.exec_()
    │   └ <built-in method exec_>
    └ <PyQt5.QtWidgets.QApplication object at 0x124fbddc0>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/magicgui/backends/_qtpy/widgets.py", line 646, in _emit_data
    self._event_filter.valueChanged.emit(self._qwidget.itemData(index))
    │    │             │                 │    │        │        └ 0
    │    │             │                 │    │        └ <built-in method itemData>
    │    │             │                 │    └ <PyQt5.QtWidgets.QComboBox object at 0x13169a8b0>
    │    │             │                 └ <magicgui.backends._qtpy.widgets.ComboBox object at 0x1316eff10>
    │    │             └ <unbound PYQT_SIGNAL valueChanged(PyQt_PyObject)>
    │    └ <magicgui.backends._qtpy.widgets.EventFilter object at 0x13169af70>
    └ <magicgui.backends._qtpy.widgets.ComboBox object at 0x1316eff10>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/magicgui/widgets/_bases/value_widget.py", line 57, in _on_value_change
    self.changed.emit(value)
    │    │       │    └ 'Connected component labeling (clesperanto)'
    │    │       └ <cyfunction SignalInstance.emit at 0x103049790>
    │    └ <SignalInstance 'changed' on ComboBox(value='Connected component labeling (clesperanto)', annotation=<class 'str'>, name='op_...
    └ ComboBox(value='Connected component labeling (clesperanto)', annotation=<class 'str'>, name='op_name')
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/magicgui/events.py", line 85, in _run_emit_loop
    cb(*args[:max_args])
    │   │     └ 0
    │   └ ('Connected component labeling (clesperanto)',)
    └ <function ContainerWidget.insert.<locals>.<lambda> at 0x1317a4dc0>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/magicgui/widgets/_bases/container_widget.py", line 165, in <lambda>
    widget.changed.connect(lambda: self.changed.emit(self))
                                   │    │       │    └ <FunctionGui do_label(*, input0: napari.layers.base.base.Layer = <Image layer 'Image:0' at 0x14f5089d0>, op_name: str = 'Conn...
                                   │    │       └ <cyfunction SignalInstance.emit at 0x103049790>
                                   │    └ <SignalInstance 'changed' on <FunctionGui do_label(*, input0: napari.layers.base.base.Layer = <Image layer 'Image:0' at 0x14f...
                                   └ <FunctionGui do_label(*, input0: napari.layers.base.base.Layer = <Image layer 'Image:0' at 0x14f5089d0>, op_name: str = 'Conn...
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/magicgui/events.py", line 85, in _run_emit_loop
    cb(*args[:max_args])
    │   │     └ 0
    │   └ (<FunctionGui do_label(*, input0: napari.layers.base.base.Layer = <Image layer 'Image:0' at 0x14f5089d0>, op_name: str = 'Con...
    └ <bound method FunctionGui._on_change of <FunctionGui do_label(*, input0: napari.layers.base.base.Layer = <Image layer 'Image:...
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/magicgui/widgets/_function_gui.py", line 221, in _on_change
    self()
    └ <FunctionGui do_label(*, input0: napari.layers.base.base.Layer = <Image layer 'Image:0' at 0x14f5089d0>, op_name: str = 'Conn...
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/magicgui/widgets/_function_gui.py", line 303, in __call__
    value = self._function(*bound.args, **bound.kwargs)
            │    │          │     │       │     └ <property object at 0x10301e130>
            │    │          │     │       └ <BoundArguments (input0=<Image layer 'Image:0' at 0x14f5089d0>, op_name='Connected component labeling (clesperanto)', x=2.0, ...
            │    │          │     └ <property object at 0x10301e0e0>
            │    │          └ <BoundArguments (input0=<Image layer 'Image:0' at 0x14f5089d0>, op_name='Connected component labeling (clesperanto)', x=2.0, ...
            │    └ <function make_gui_for_category.<locals>.gui_function at 0x16c81c1f0>
            └ <FunctionGui do_label(*, input0: napari.layers.base.base.Layer = <Image layer 'Image:0' at 0x14f5089d0>, op_name: str = 'Conn...
> File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/napari_pyclesperanto_assistant/_gui/_category_widget.py", line 324, in gui_function
    result, used_args = call_op(op_name, inputs, t_position, viewer, **kwargs)
                        │       │        │       │           │         └ {'x': 2.0, 'y': 2.0, 'z': 0.0, 'u': 0.0, 'v': 0.0, 'w': 0.0, 'a': False, 'b': False, 'c': False, 'k': '', 'l': '', 'm': ''}
                        │       │        │       │           └ Viewer(axes=Axes(visible=False, labels=True, colored=True, dashed=False, arrows=True), camera=Camera(center=(0.0, 126.5, 127....
                        │       │        │       └ None
                        │       │        └ [<Image layer 'Image:0' at 0x14f5089d0>]
                        │       └ 'Connected component labeling (clesperanto)'
                        └ <function call_op at 0x14df454c0>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/napari_pyclesperanto_assistant/_gui/_category_widget.py", line 154, in call_op
    gpu_out = gpu_out.astype(int)
              │       └ <function OCLArray.astype at 0x14d91e700>
              └ cl.Array([[1, 1, 1, ..., 1, 1, 1],
                       [1, 1, 1, ..., 1, 1, 1],
                       [1, 1, 1, ..., 1, 1, 1],
                       ...,
                       [1, 1, ...
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier0/_pycl.py", line 148, in astype
    return copy(self, copied)
           │    │     └ cl.Array([[0, 0, 0, ..., 0, 0, 0],
           │    │              [0, 0, 0, ..., 0, 0, 0],
           │    │              [0, 0, 0, ..., 0, 0, 0],
           │    │              ...,
           │    │              [0, 0, ...
           │    └ cl.Array([[1, 1, 1, ..., 1, 1, 1],
           │             [1, 1, 1, ..., 1, 1, 1],
           │             [1, 1, 1, ..., 1, 1, 1],
           │             ...,
           │             [1, 1, ...
           └ <function copy at 0x14d93c280>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier0/_plugin_function.py", line 71, in worker_function
    return function(*bound.args, **bound.kwargs)
           │         │     │       │     └ <property object at 0x10301e130>
           │         │     │       └ <BoundArguments (source=cl.Array([[1, 1, 1, ..., 1, 1, 1],
           │         │     │                [1, 1, 1, ..., 1, 1, 1],
           │         │     │                [1, 1, 1, ..., 1, 1, 1],
           │         │     │           ...
           │         │     └ <property object at 0x10301e0e0>
           │         └ <BoundArguments (source=cl.Array([[1, 1, 1, ..., 1, 1, 1],
           │                  [1, 1, 1, ..., 1, 1, 1],
           │                  [1, 1, 1, ..., 1, 1, 1],
           │             ...
           └ <function copy at 0x14d93c1f0>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier1/_copy.py", line 36, in copy
    execute(__file__, '../clij-opencl-kernels/kernels/copy_' + str(len(destination.shape)) + 'd_x.cl', 'copy_' + str(len(destination.shape)) + 'd', destination.shape, parameters)
    │       │                                                          │           │                                     │           │              │           │      └ {'dst': cl.Array([[0, 0, 0, ..., 0, 0, 0],
    │       │                                                          │           │                                     │           │              │           │               [0, 0, 0, ..., 0, 0, 0],
    │       │                                                          │           │                                     │           │              │           │               [0, 0, 0, ..., 0, 0, 0],
    │       │                                                          │           │                                     │           │              │           │               ...,
    │       │                                                          │           │                                     │           │              │           │              ...
    │       │                                                          │           │                                     │           │              │           └ (254, 256)
    │       │                                                          │           │                                     │           │              └ cl.Array([[0, 0, 0, ..., 0, 0, 0],
    │       │                                                          │           │                                     │           │                       [0, 0, 0, ..., 0, 0, 0],
    │       │                                                          │           │                                     │           │                       [0, 0, 0, ..., 0, 0, 0],
    │       │                                                          │           │                                     │           │                       ...,
    │       │                                                          │           │                                     │           │                       [0, 0, ...
    │       │                                                          │           │                                     │           └ (254, 256)
    │       │                                                          │           │                                     └ cl.Array([[0, 0, 0, ..., 0, 0, 0],
    │       │                                                          │           │                                              [0, 0, 0, ..., 0, 0, 0],
    │       │                                                          │           │                                              [0, 0, 0, ..., 0, 0, 0],
    │       │                                                          │           │                                              ...,
    │       │                                                          │           │                                              [0, 0, ...
    │       │                                                          │           └ (254, 256)
    │       │                                                          └ cl.Array([[0, 0, 0, ..., 0, 0, 0],
    │       │                                                                   [0, 0, 0, ..., 0, 0, 0],
    │       │                                                                   [0, 0, 0, ..., 0, 0, 0],
    │       │                                                                   ...,
    │       │                                                                   [0, 0, ...
    │       └ '/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier1/_copy.py'
    └ <function execute at 0x14d7d24c0>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier0/_execute.py", line 3, in execute
    return Backend.get_instance().get().execute(anchor, opencl_kernel_filename, kernel_name, global_size, parameters, prog, constants, image_size_independent_kernel_compilation, device)
           │       │                            │       │                       │            │            │           │     │          │                                          └ None
           │       │                            │       │                       │            │            │           │     │          └ None
           │       │                            │       │                       │            │            │           │     └ None
           │       │                            │       │                       │            │            │           └ None
           │       │                            │       │                       │            │            └ {'dst': cl.Array([[0, 0, 0, ..., 0, 0, 0],
           │       │                            │       │                       │            │                     [0, 0, 0, ..., 0, 0, 0],
           │       │                            │       │                       │            │                     [0, 0, 0, ..., 0, 0, 0],
           │       │                            │       │                       │            │                     ...,
           │       │                            │       │                       │            │                    ...
           │       │                            │       │                       │            └ (254, 256)
           │       │                            │       │                       └ 'copy_2d'
           │       │                            │       └ '../clij-opencl-kernels/kernels/copy_2d_x.cl'
           │       │                            └ '/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier1/_copy.py'
           │       └ <classmethod object at 0x14d594ca0>
           └ <class 'pyclesperanto_prototype._tier0._backends.Backend'>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier0/_opencl_backend.py", line 41, in execute
    return execute(anchor, opencl_kernel_filename, kernel_name, global_size, parameters, prog, constants, image_size_independent_kernel_compilation, device)
           │       │       │                       │            │            │           │     │          │                                          └ None
           │       │       │                       │            │            │           │     │          └ None
           │       │       │                       │            │            │           │     └ None
           │       │       │                       │            │            │           └ None
           │       │       │                       │            │            └ {'dst': cl.Array([[0, 0, 0, ..., 0, 0, 0],
           │       │       │                       │            │                     [0, 0, 0, ..., 0, 0, 0],
           │       │       │                       │            │                     [0, 0, 0, ..., 0, 0, 0],
           │       │       │                       │            │                     ...,
           │       │       │                       │            │                    ...
           │       │       │                       │            └ (254, 256)
           │       │       │                       └ 'copy_2d'
           │       │       └ '../clij-opencl-kernels/kernels/copy_2d_x.cl'
           │       └ '/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier1/_copy.py'
           └ <function execute at 0x17ea408b0>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier0/_opencl_execute.py", line 311, in execute
    prog = device.program_from_source("\n".join(defines))
           │      │                             └ ['#define MAX_ARRAY_SIZE 1000', '#define GET_IMAGE_WIDTH(image_key) image_size_ ## image_key ## _width', '#define GET_IMAGE_H...
           │      └ <functools._lru_cache_wrapper object at 0x14d8f5ae0>
           └ <Apple M1 on Platform: Apple (75 refs)>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier0/_device.py", line 26, in program_from_source
    return OCLProgram(src_str=source, dev=self)
           │                  │           └ <Apple M1 on Platform: Apple (75 refs)>
           │                  └ '#define MAX_ARRAY_SIZE 1000\n#define GET_IMAGE_WIDTH(image_key) image_size_ ## image_key ## _width\n#define GET_IMAGE_HEIGHT...
           └ <class 'pyclesperanto_prototype._tier0._program.OCLProgram'>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyclesperanto_prototype/_tier0/_program.py", line 28, in __init__
    self.build(options=build_options)
    │    │             └ []
    │    └ <function Program.build at 0x14d8b8c10>
    └ <pyclesperanto_prototype._tier0._program.OCLProgram object at 0x16dd59ac0>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyopencl/__init__.py", line 536, in build
    self._prg, was_cached = self._build_and_catch_errors(
    │    │                  │    └ <function Program._build_and_catch_errors at 0x14d8b8ca0>
    │    │                  └ <pyclesperanto_prototype._tier0._program.OCLProgram object at 0x16dd59ac0>
    │    └ None
    └ <pyclesperanto_prototype._tier0._program.OCLProgram object at 0x16dd59ac0>
  File "/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyopencl/__init__.py", line 584, in _build_and_catch_errors
    raise err
          └ RuntimeError(<pyopencl._cl._ErrorRecord object at 0x16dd548b0>)

pyopencl._cl.RuntimeError: clBuildProgram failed: BUILD_PROGRAM_FAILURE - clBuildProgram failed: BUILD_PROGRAM_FAILURE - clBuildProgram failed: BUILD_PROGRAM_FAILURE

Build on <pyopencl.Device 'Apple M1' on 'Apple' at 0x1027f00>:

Compiler encountered an internal error
(options: -I /Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/lib/python3.9/site-packages/pyopencl/cl)
(source saved as /var/folders/sy/y3_x27j14cxg3_vhycs6cr_h0000gn/T/tmppdsr9h65.cl)

[haesleinhuepf]

Hi @psobolewskiPhD ,

thanks for reporting! Unfortunately, I can't reproduce this issue on my M1 Mac. I guess it has something todo with other installed dependencies. Would you mind comparing your environment to mine? This is my conda list:

absl-py                   1.0.0                    pypi_0    pypi
alabaster                 0.7.12                     py_0    conda-forge
anyio                     3.5.0            py39h6e9494a_0    conda-forge
apoc                      0.6.2                     dev_0    <develop>
appdirs                   1.4.4              pyh9f0ad1d_0    conda-forge
appnope                   0.1.2            py39h6e9494a_2    conda-forge
argon2-cffi               21.3.0             pyhd8ed1ab_0    conda-forge
argon2-cffi-bindings      21.2.0           py39h89e85a6_1    conda-forge
asciitree                 0.3.3                      py_2    conda-forge
asttokens                 2.0.5              pyhd8ed1ab_0    conda-forge
astunparse                1.6.3                    pypi_0    pypi
attrs                     21.4.0             pyhd8ed1ab_0    conda-forge
autopep8                  1.6.0                    pypi_0    pypi
babel                     2.9.1              pyh44b312d_0    conda-forge
backcall                  0.2.0              pyh9f0ad1d_0    conda-forge
backports                 1.0                        py_2    conda-forge
backports.functools_lru_cache 1.6.4              pyhd8ed1ab_0    conda-forge
beautifulsoup4            4.10.0                   pypi_0    pypi
biapol-utilities          0.0.3                    pypi_0    pypi
black                     21.12b0            pyhd8ed1ab_0    conda-forge
bleach                    4.1.0              pyhd8ed1ab_0    conda-forge
blosc                     1.21.0               he49afe7_0    conda-forge
bokeh                     2.4.2            py39h6e9494a_0    conda-forge
brotli                    1.0.9                h0d85af4_6    conda-forge
brotli-bin                1.0.9                h0d85af4_6    conda-forge
brotlipy                  0.7.0           py39h89e85a6_1003    conda-forge
brunsli                   0.1                  h046ec9c_0    conda-forge
bzip2                     1.0.8                h0d85af4_4    conda-forge
c-ares                    1.18.1               h0d85af4_0    conda-forge
c-blosc2                  2.0.4                ha1a4663_1    conda-forge
ca-certificates           2021.10.8            h033912b_0    conda-forge
cachetools                5.0.0                    pypi_0    pypi
cachey                    0.2.1              pyh9f0ad1d_0    conda-forge
cellpose                  1.0.0                    pypi_0    pypi
certifi                   2021.10.8        py39h6e9494a_1    conda-forge
cffi                      1.14.6           py39hb71fe58_0    conda-forge
cfitsio                   4.0.0                hb20e66c_0    conda-forge
charls                    2.2.0                h046ec9c_0    conda-forge
charset-normalizer        2.0.10             pyhd8ed1ab_0    conda-forge
click                     7.1.2                    pypi_0    pypi
cloudpickle               2.0.0              pyhd8ed1ab_0    conda-forge
colorama                  0.4.4              pyh9f0ad1d_0    conda-forge
cryptography              36.0.1           py39h209aa08_0    conda-forge
csbdeep                   0.6.3                    pypi_0    pypi
cycler                    0.11.0             pyhd8ed1ab_0    conda-forge
cytoolz                   0.11.2           py39h89e85a6_1    conda-forge
dask                      2022.1.1           pyhd8ed1ab_0    conda-forge
dask-core                 2022.1.1           pyhd8ed1ab_0    conda-forge
dask-image                2021.12.0          pyhd8ed1ab_0    conda-forge
dataclasses               0.8                pyhc8e2a94_3    conda-forge
dbus                      1.13.6               ha13b53f_2    conda-forge
debugpy                   1.5.1            py39h9fcab8e_0    conda-forge
decorator                 5.1.1              pyhd8ed1ab_0    conda-forge
defusedxml                0.7.1              pyhd8ed1ab_0    conda-forge
distributed               2022.1.1         py39h6e9494a_0    conda-forge
docstring_parser          0.13               pyhd8ed1ab_0    conda-forge
docutils                  0.16             py39h6e9494a_3    conda-forge
entrypoints               0.3             pyhd8ed1ab_1003    conda-forge
executing                 0.8.2              pyhd8ed1ab_0    conda-forge
expat                     2.4.3                he49afe7_0    conda-forge
fasteners                 0.16               pyhd8ed1ab_0    conda-forge
fastremap                 1.12.2                   pypi_0    pypi
flatbuffers               2.0                      pypi_0    pypi
flit-core                 3.6.0              pyhd8ed1ab_0    conda-forge
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 hab24e00_0    conda-forge
fontconfig                2.13.94              h10f422b_0    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
fonttools                 4.29.0           py39h89e85a6_0    conda-forge
freetype                  2.10.4               h4cff582_1    conda-forge
freetype-py               2.2.0              pyh9f0ad1d_0    conda-forge
fsspec                    2022.1.0           pyhd8ed1ab_0    conda-forge
future                    0.18.2                   pypi_0    pypi
gast                      0.5.3                    pypi_0    pypi
gettext                   0.19.8.1          h7937167_1005    conda-forge
giflib                    5.2.1                hbcb3906_2    conda-forge
gitdb                     4.0.9                    pypi_0    pypi
gitpython                 3.1.26                   pypi_0    pypi
glib                      2.68.4               he49afe7_0    conda-forge
glib-tools                2.68.4               he49afe7_0    conda-forge
google-auth               2.6.0                    pypi_0    pypi
google-auth-oauthlib      0.4.6                    pypi_0    pypi
google-pasta              0.2.0                    pypi_0    pypi
greenlet                  1.1.2                    pypi_0    pypi
grpcio                    1.43.0                   pypi_0    pypi
h5py                      3.6.0                    pypi_0    pypi
haesleinhuepf-pyqode-core 2.15.5                   pypi_0    pypi
haesleinhuepf-pyqode-python 2.15.2                   pypi_0    pypi
heapdict                  1.0.1                      py_0    conda-forge
hsluv                     5.0.2              pyh44b312d_0    conda-forge
icu                       69.1                 he49afe7_0    conda-forge
idna                      3.3                pyhd8ed1ab_0    conda-forge
imagecodecs               2021.11.20       py39h90d8905_1    conda-forge
imageio                   2.14.1             pyh239f2a4_0    conda-forge
imagesize                 1.3.0              pyhd8ed1ab_0    conda-forge
importlib-metadata        4.10.1           py39h6e9494a_0    conda-forge
importlib_metadata        4.10.1               hd8ed1ab_0    conda-forge
importlib_resources       5.4.0              pyhd8ed1ab_0    conda-forge
iniconfig                 1.1.1                    pypi_0    pypi
intervaltree              3.0.2                      py_0    conda-forge
ipykernel                 6.7.0            py39h71a6800_0    conda-forge
ipython                   8.0.1            py39h6e9494a_0    conda-forge
ipython_genutils          0.2.0                      py_1    conda-forge
ipywidgets                7.6.5                    pypi_0    pypi
jbig                      2.1               h0d85af4_2003    conda-forge
jedi                      0.18.1           py39h6e9494a_0    conda-forge
jinja2                    3.0.3              pyhd8ed1ab_0    conda-forge
joblib                    1.1.0                    pypi_0    pypi
jpeg                      9e                   h0d85af4_0    conda-forge
json5                     0.9.5              pyh9f0ad1d_0    conda-forge
jsonschema                3.2.0                    pypi_0    pypi
jupyter                   1.0.0                    pypi_0    pypi
jupyter-book              0.12.1                   pypi_0    pypi
jupyter-cache             0.4.3                    pypi_0    pypi
jupyter-console           6.4.0                    pypi_0    pypi
jupyter-server-mathjax    0.2.3                    pypi_0    pypi
jupyter-sphinx            0.3.2                    pypi_0    pypi
jupyter_client            7.1.2              pyhd8ed1ab_0    conda-forge
jupyter_core              4.9.1            py39h6e9494a_1    conda-forge
jupyter_server            1.13.4             pyhd8ed1ab_0    conda-forge
jupyterlab                3.2.8              pyhd8ed1ab_0    conda-forge
jupyterlab-spellchecker   0.7.2                    pypi_0    pypi
jupyterlab-widgets        1.0.2                    pypi_0    pypi
jupyterlab_pygments       0.1.2              pyh9f0ad1d_0    conda-forge
jupyterlab_server         2.10.3             pyhd8ed1ab_0    conda-forge
jupytext                  1.11.5                   pypi_0    pypi
jxrlib                    1.1                  h35c211d_2    conda-forge
keras                     2.8.0                    pypi_0    pypi
keras-preprocessing       1.1.2                    pypi_0    pypi
kiwisolver                1.3.2            py39hf018cea_1    conda-forge
krb5                      1.19.2               hcfbf3a7_3    conda-forge
latexcodec                2.0.1                    pypi_0    pypi
lcms2                     2.12                 h577c468_0    conda-forge
lerc                      3.0                  he49afe7_0    conda-forge
libaec                    1.0.6                he49afe7_0    conda-forge
libblas                   3.9.0           13_osx64_openblas    conda-forge
libbrotlicommon           1.0.9                h0d85af4_6    conda-forge
libbrotlidec              1.0.9                h0d85af4_6    conda-forge
libbrotlienc              1.0.9                h0d85af4_6    conda-forge
libcblas                  3.9.0           13_osx64_openblas    conda-forge
libclang                  13.0.0                   pypi_0    pypi
libcurl                   7.81.0               hf45b732_0    conda-forge
libcxx                    12.0.1               habf9029_1    conda-forge
libdeflate                1.8                  h0d85af4_0    conda-forge
libedit                   3.1.20191231         h0678c8f_2    conda-forge
libev                     4.33                 haf1e3a3_1    conda-forge
libffi                    3.3                  h046ec9c_2    conda-forge
libgfortran               5.0.0           9_3_0_h6c81a4c_23    conda-forge
libgfortran5              9.3.0               h6c81a4c_23    conda-forge
libglib                   2.68.4               hd556434_0    conda-forge
libiconv                  1.16                 haf1e3a3_0    conda-forge
liblapack                 3.9.0           13_osx64_openblas    conda-forge
libllvm13                 13.0.0               hd011deb_0    conda-forge
libnghttp2                1.46.0               h6f36284_0    conda-forge
libopenblas               0.3.18          openmp_h3351f45_0    conda-forge
libpng                    1.6.37               h7cec526_2    conda-forge
libpq                     14.1                 hea3049e_1    conda-forge
libsodium                 1.0.18               hbcb3906_1    conda-forge
libssh2                   1.10.0               h52ee1ee_2    conda-forge
libtiff                   4.3.0                hd146c10_2    conda-forge
libwebp-base              1.2.2                h0d85af4_1    conda-forge
libxml2                   2.9.12               h7e28ab6_1    conda-forge
libzlib                   1.2.11            h9173be1_1013    conda-forge
libzopfli                 1.0.3                h046ec9c_0    conda-forge
linkify-it-py             1.0.3                    pypi_0    pypi
llvm-openmp               12.0.1               hda6cdc1_1    conda-forge
llvmlite                  0.38.0                   pypi_0    pypi
locket                    0.2.0                      py_2    conda-forge
loguru                    0.6.0                    pypi_0    pypi
lz4-c                     1.9.3                he49afe7_1    conda-forge
magicgui                  0.3.4              pyhd8ed1ab_0    conda-forge
markdown                  3.3.6                    pypi_0    pypi
markdown-it-py            1.1.0                    pypi_0    pypi
markupsafe                2.0.1            py39h89e85a6_1    conda-forge
matplotlib-base           3.5.1            py39hb07454d_0    conda-forge
matplotlib-inline         0.1.3              pyhd8ed1ab_0    conda-forge
mdit-py-plugins           0.2.8                    pypi_0    pypi
mistune                   0.8.4           py39h89e85a6_1005    conda-forge
monotonic                 1.5                        py_0    conda-forge
msgpack-python            1.0.3            py39hf018cea_0    conda-forge
munkres                   1.1.4              pyh9f0ad1d_0    conda-forge
mypy_extensions           0.4.3            py39h6e9494a_4    conda-forge
mysql-common              8.0.28               h694c41f_0    conda-forge
mysql-libs                8.0.28               h115446f_0    conda-forge
myst-nb                   0.13.1                   pypi_0    pypi
myst-parser               0.15.2                   pypi_0    pypi
napari                    0.4.14                   pypi_0    pypi
napari-accelerated-pixel-and-object-classification 0.6.2                     dev_0    <develop>
napari-console            0.0.4              pyhd8ed1ab_0    conda-forge
napari-plugin-engine      0.2.0              pyhd8ed1ab_2    conda-forge
napari-pyclesperanto-assistant 0.15.1                    dev_0    <develop>
napari-script-editor      0.2.7                    pypi_0    pypi
napari-segment-blobs-and-things-with-membranes 0.2.14                   pypi_0    pypi
napari-simpleitk-image-processing 0.2.1                     dev_0    <develop>
napari-skimage-regionprops 0.2.9                    pypi_0    pypi
napari-svg                0.1.5              pyhd8ed1ab_0    conda-forge
napari-time-slicer        0.4.2                    pypi_0    pypi
napari-tools-menu         0.1.10                   pypi_0    pypi
napari-workflows          0.1.2                     dev_0    <develop>
natsort                   8.1.0                    pypi_0    pypi
nbclassic                 0.3.5              pyhd8ed1ab_0    conda-forge
nbclient                  0.5.10             pyhd8ed1ab_1    conda-forge
nbconvert                 6.4.1            py39h6e9494a_0    conda-forge
nbdime                    3.1.1                    pypi_0    pypi
nbformat                  5.1.3              pyhd8ed1ab_0    conda-forge
ncurses                   6.3                  he49afe7_0    conda-forge
nest-asyncio              1.5.4              pyhd8ed1ab_0    conda-forge
networkx                  2.6.3              pyhd8ed1ab_1    conda-forge
notebook                  6.4.8              pyha770c72_0    conda-forge
npe2                      0.1.2              pyhd8ed1ab_0    conda-forge
nspr                      4.32                 hcd9eead_1    conda-forge
nss                       3.74                 h31e2bf1_0    conda-forge
numba                     0.55.1                   pypi_0    pypi
numcodecs                 0.9.1            py39h9fcab8e_2    conda-forge
numpy                     1.21.5           py39h516c64c_0    conda-forge
numpydoc                  1.2                pyhd8ed1ab_0    conda-forge
oauthlib                  3.2.0                    pypi_0    pypi
olefile                   0.46               pyh9f0ad1d_1    conda-forge
opencv-python-headless    4.5.5.62                 pypi_0    pypi
openjpeg                  2.4.0                h6e7aa92_1    conda-forge
openssl                   1.1.1l               h0d85af4_0    conda-forge
opt-einsum                3.3.0                    pypi_0    pypi
packaging                 21.3               pyhd8ed1ab_0    conda-forge
pandas                    1.4.0            py39h4d6be9b_0    conda-forge
pandoc                    2.17.0.1             h694c41f_1    conda-forge
pandocfilters             1.5.0              pyhd8ed1ab_0    conda-forge
parso                     0.8.3              pyhd8ed1ab_0    conda-forge
partd                     1.2.0              pyhd8ed1ab_0    conda-forge
pathspec                  0.9.0              pyhd8ed1ab_0    conda-forge
pcre                      8.45                 he49afe7_0    conda-forge
pexpect                   4.8.0              pyh9f0ad1d_2    conda-forge
pickleshare               0.7.5                   py_1003    conda-forge
pillow                    9.0.0                    pypi_0    pypi
pims                      0.5                pyh9f0ad1d_1    conda-forge
pint                      0.18               pyhd8ed1ab_0    conda-forge
pip                       21.3.1             pyhd8ed1ab_0    conda-forge
platformdirs              2.3.0              pyhd8ed1ab_0    conda-forge
pluggy                    1.0.0                    pypi_0    pypi
pooch                     1.6.0                    pypi_0    pypi
prometheus_client         0.13.1             pyhd8ed1ab_0    conda-forge
prompt-toolkit            3.0.26             pyha770c72_0    conda-forge
protobuf                  3.19.4                   pypi_0    pypi
psutil                    5.9.0            py39h89e85a6_0    conda-forge
psygnal                   0.2.0            py39hf018cea_1    conda-forge
ptyprocess                0.7.0              pyhd3deb0d_0    conda-forge
pure_eval                 0.2.2              pyhd8ed1ab_0    conda-forge
py                        1.11.0                   pypi_0    pypi
pyasn1                    0.4.8                    pypi_0    pypi
pyasn1-modules            0.2.8                    pypi_0    pypi
pybtex                    0.24.0                   pypi_0    pypi
pybtex-docutils           1.0.1                    pypi_0    pypi
pyclesperanto-prototype   0.15.0                    dev_0    <develop>
pycodestyle               2.8.0                    pypi_0    pypi
pycparser                 2.21               pyhd8ed1ab_0    conda-forge
pydantic                  1.9.0            py39h89e85a6_0    conda-forge
pydata-sphinx-theme       0.7.2                    pypi_0    pypi
pyflakes                  2.4.0                    pypi_0    pypi
pygments                  2.11.2             pyhd8ed1ab_0    conda-forge
pyopencl                  2021.2.6                 pypi_0    pypi
pyopengl                  3.1.5                      py_0    conda-forge
pyopenssl                 21.0.0             pyhd8ed1ab_0    conda-forge
pyparsing                 3.0.7              pyhd8ed1ab_0    conda-forge
pyperclip                 1.8.2                    pypi_0    pypi
pyqt                      5.12.3           py39h6e9494a_8    conda-forge
pyqt-impl                 5.12.3           py39he44290a_8    conda-forge
pyqt5                     5.15.6                   pypi_0    pypi
pyqt5-qt5                 5.15.2                   pypi_0    pypi
pyqt5-sip                 12.9.0                   pypi_0    pypi
pyqtchart                 5.12             py39he44290a_8    conda-forge
pyqtwebengine             5.12.1           py39he44290a_8    conda-forge
pyrsistent                0.18.1           py39h89e85a6_0    conda-forge
pysocks                   1.7.1            py39h6e9494a_4    conda-forge
pytest                    6.2.5                    pypi_0    pypi
python                    3.9.0           h4f09611_5_cpython    conda-forge
python-dateutil           2.8.2              pyhd8ed1ab_0    conda-forge
python_abi                3.9                      2_cp39    conda-forge
pytomlpp                  1.0.10           py39hf018cea_0    conda-forge
pytools                   2021.2.9                 pypi_0    pypi
pytz                      2021.3             pyhd8ed1ab_0    conda-forge
pywavelets                1.2.0            py39hc89836e_1    conda-forge
pyyaml                    6.0              py39h89e85a6_3    conda-forge
pyzmq                     22.3.0           py39h7fec2f1_1    conda-forge
qt                        5.12.9               h2a607e2_5    conda-forge
qtconsole                 5.2.2              pyhd8ed1ab_1    conda-forge
qtconsole-base            5.2.2              pyhd8ed1ab_1    conda-forge
qtpy                      2.0.0              pyhd8ed1ab_0    conda-forge
readline                  8.1                  h05e3726_0    conda-forge
redlionfish               0.6                      pypi_0    pypi
requests                  2.27.1             pyhd8ed1ab_0    conda-forge
requests-oauthlib         1.3.1                    pypi_0    pypi
rsa                       4.8                      pypi_0    pypi
scikit-image              0.19.1           py39h4d6be9b_0    conda-forge
scikit-learn              1.0.2                    pypi_0    pypi
scipy                     1.7.3            py39h056f1c0_0    conda-forge
seaborn                   0.11.2                   pypi_0    pypi
send2trash                1.8.0              pyhd8ed1ab_0    conda-forge
setuptools                59.8.0           py39h6e9494a_0    conda-forge
shellingham               1.4.0              pyh44b312d_0    conda-forge
simpleitk                 2.1.1                    pypi_0    pypi
six                       1.16.0             pyh6c4a22f_0    conda-forge
slicerator                1.0.0                      py_0    conda-forge
smmap                     5.0.0                    pypi_0    pypi
snappy                    1.1.8                hb1e8313_3    conda-forge
sniffio                   1.2.0            py39h6e9494a_2    conda-forge
snowballstemmer           2.2.0              pyhd8ed1ab_0    conda-forge
sortedcontainers          2.4.0              pyhd8ed1ab_0    conda-forge
soupsieve                 2.3.1                    pypi_0    pypi
sphinx                    4.4.0              pyh6c4a22f_1    conda-forge
sphinx-book-theme         0.1.10                   pypi_0    pypi
sphinx-comments           0.0.3                    pypi_0    pypi
sphinx-copybutton         0.4.0                    pypi_0    pypi
sphinx-external-toc       0.2.3                    pypi_0    pypi
sphinx-jupyterbook-latex  0.4.6                    pypi_0    pypi
sphinx-multitoc-numbering 0.1.3                    pypi_0    pypi
sphinx-panels             0.6.0                    pypi_0    pypi
sphinx-thebe              0.0.10                   pypi_0    pypi
sphinx-togglebutton       0.2.3                    pypi_0    pypi
sphinxcontrib-applehelp   1.0.2                      py_0    conda-forge
sphinxcontrib-bibtex      2.2.1                    pypi_0    pypi
sphinxcontrib-devhelp     1.0.2                      py_0    conda-forge
sphinxcontrib-htmlhelp    2.0.0              pyhd8ed1ab_0    conda-forge
sphinxcontrib-jsmath      1.0.1                      py_0    conda-forge
sphinxcontrib-qthelp      1.0.3                      py_0    conda-forge
sphinxcontrib-serializinghtml 1.1.5              pyhd8ed1ab_1    conda-forge
sqlalchemy                1.4.31                   pypi_0    pypi
sqlite                    3.37.0               h23a322b_0    conda-forge
stack_data                0.1.4              pyhd8ed1ab_0    conda-forge
stardist                  0.7.3                    pypi_0    pypi
superqt                   0.2.5.post1        pyhd8ed1ab_0    conda-forge
tblib                     1.7.0              pyhd8ed1ab_0    conda-forge
tensorboard               2.8.0                    pypi_0    pypi
tensorboard-data-server   0.6.1                    pypi_0    pypi
tensorboard-plugin-wit    1.8.1                    pypi_0    pypi
tensorflow                2.8.0                    pypi_0    pypi
tensorflow-io-gcs-filesystem 0.24.0                   pypi_0    pypi
termcolor                 1.1.0                    pypi_0    pypi
terminado                 0.13.1           py39h6e9494a_0    conda-forge
testpath                  0.5.0              pyhd8ed1ab_0    conda-forge
tf-estimator-nightly      2.8.0.dev2021122109          pypi_0    pypi
threadpoolctl             3.0.0                    pypi_0    pypi
tifffile                  2021.11.2          pyhd8ed1ab_0    conda-forge
tk                        8.6.11               h5dbffcc_1    conda-forge
toml                      0.10.2                   pypi_0    pypi
tomli                     1.2.2              pyhd8ed1ab_0    conda-forge
toolz                     0.11.2             pyhd8ed1ab_0    conda-forge
torch                     1.10.2                   pypi_0    pypi
tornado                   6.1              py39h89e85a6_2    conda-forge
tqdm                      4.62.3             pyhd8ed1ab_0    conda-forge
traitlets                 5.1.1              pyhd8ed1ab_0    conda-forge
transforms3d              0.3.1                    pypi_0    pypi
typed-ast                 1.5.2            py39h89e85a6_0    conda-forge
typer                     0.4.0              pyhd8ed1ab_0    conda-forge
typing-extensions         4.0.1                hd8ed1ab_0    conda-forge
typing_extensions         4.0.1              pyha770c72_0    conda-forge
tzdata                    2021e                he74cb21_0    conda-forge
uc-micro-py               1.0.1                    pypi_0    pypi
unicodedata2              14.0.0           py39h89e85a6_0    conda-forge
urllib3                   1.26.8             pyhd8ed1ab_1    conda-forge
vispy                     0.9.4            py39h7c35a4d_0    conda-forge
wcwidth                   0.2.5              pyh9f0ad1d_2    conda-forge
webencodings              0.5.1                      py_1    conda-forge
websocket-client          1.2.3              pyhd8ed1ab_0    conda-forge
werkzeug                  2.0.3                    pypi_0    pypi
wheel                     0.37.1             pyhd8ed1ab_0    conda-forge
widgetsnbextension        3.5.2                    pypi_0    pypi
wrapt                     1.13.3           py39h89e85a6_1    conda-forge
xz                        5.2.5                haf1e3a3_1    conda-forge
yaml                      0.2.5                h0d85af4_2    conda-forge
zarr                      2.10.3             pyhd8ed1ab_0    conda-forge
zeromq                    4.3.4                he49afe7_1    conda-forge
zfp                       0.5.5                h4a89273_8    conda-forge
zict                      2.0.0                      py_0    conda-forge
zipp                      3.7.0              pyhd8ed1ab_0    conda-forge
zlib                      1.2.11            h9173be1_1013    conda-forge
zstd                      1.5.2                h582d3a0_0    conda-forge

Thanks!

[psobolewskiPhD]

Here's my conda env, all quite fresh.
Only related thing that's different is my pyopencl is newer?
pyopencl 2021.2.13 pypi_0 pypi

# Name                    Version                   Build  Channel
adwaita-icon-theme        41.0                 ha770c72_1    conda-forge
aicsimageio               4.5.2              pyhd8ed1ab_0    conda-forge
aicspylibczi              3.0.4                    pypi_0    pypi
aiohttp                   3.8.1                    pypi_0    pypi
aiosignal                 1.2.0                    pypi_0    pypi
alabaster                 0.7.12                     py_0    conda-forge
appdirs                   1.4.4              pyh9f0ad1d_0    conda-forge
appnope                   0.1.2            py39h2804cbe_2    conda-forge
argon2-cffi               21.3.0                   pypi_0    pypi
argon2-cffi-bindings      21.2.0                   pypi_0    pypi
asciitree                 0.3.3                      py_2    conda-forge
asttokens                 2.0.5              pyhd8ed1ab_0    conda-forge
async-timeout             4.0.2                    pypi_0    pypi
atk-1.0                   2.36.0               heb41896_4    conda-forge
attrs                     21.4.0             pyhd8ed1ab_0    conda-forge
autopep8                  1.6.0                    pypi_0    pypi
babel                     2.9.1              pyh44b312d_0    conda-forge
backcall                  0.2.0              pyh9f0ad1d_0    conda-forge
backports                 1.0                        py_2    conda-forge
backports.functools_lru_cache 1.6.4              pyhd8ed1ab_0    conda-forge
black                     22.1.0             pyhd8ed1ab_0    conda-forge
blas                      2.113                accelerate    conda-forge
blas-devel                3.9.0           13_osxarm64_accelerate    conda-forge
bleach                    4.1.0                    pypi_0    pypi
blosc                     1.21.0               h9f76cd9_0    conda-forge
bokeh                     2.4.2            py39h2804cbe_0    conda-forge
brotli                    1.0.9                h3422bc3_6    conda-forge
brotli-bin                1.0.9                h3422bc3_6    conda-forge
brotlipy                  0.7.0           py39h5161555_1003    conda-forge
brunsli                   0.1                  h9f76cd9_0    conda-forge
bzip2                     1.0.8                h3422bc3_4    conda-forge
c-ares                    1.18.1               h3422bc3_0    conda-forge
c-blosc2                  2.0.4                h0095615_1    conda-forge
ca-certificates           2021.10.8            h4653dfc_0    conda-forge
cachey                    0.2.1              pyh9f0ad1d_0    conda-forge
cairo                     1.16.0            he69dfd1_1008    conda-forge
certifi                   2021.10.8        py39h2804cbe_1    conda-forge
cffi                      1.15.0           py39h52b1de0_0    conda-forge
cfitsio                   4.0.0                h99351b2_0    conda-forge
charls                    2.2.0                h9f76cd9_0    conda-forge
charset-normalizer        2.0.11             pyhd8ed1ab_0    conda-forge
click                     8.0.3            py39h2804cbe_1    conda-forge
cloudpickle               2.0.0              pyhd8ed1ab_0    conda-forge
colorama                  0.4.4              pyh9f0ad1d_0    conda-forge
cryptography              36.0.1           py39hfb8cd70_0    conda-forge
cycler                    0.11.0             pyhd8ed1ab_0    conda-forge
cytoolz                   0.11.2           py39h5161555_1    conda-forge
dask                      2022.1.1           pyhd8ed1ab_0    conda-forge
dask-core                 2022.1.1           pyhd8ed1ab_0    conda-forge
dask-image                2021.12.0          pyhd8ed1ab_0    conda-forge
dataclasses               0.8                pyhc8e2a94_3    conda-forge
debugpy                   1.5.1            py39hfb83b0d_0    conda-forge
decorator                 5.1.1              pyhd8ed1ab_0    conda-forge
defusedxml                0.7.1                    pypi_0    pypi
distributed               2022.1.1         py39h2804cbe_0    conda-forge
dnspython                 2.2.0                    pypi_0    pypi
docstring_parser          0.13               pyhd8ed1ab_0    conda-forge
docutils                  0.17.1           py39h2804cbe_1    conda-forge
elementpath               2.0.5              pyhd8ed1ab_0    conda-forge
email-validator           1.1.3                    pypi_0    pypi
entrypoints               0.4                pyhd8ed1ab_0    conda-forge
epoxy                     1.5.9                h3422bc3_0    conda-forge
executing                 0.8.2              pyhd8ed1ab_0    conda-forge
fasteners                 0.17.3             pyhd8ed1ab_0    conda-forge
ffmpeg                    4.3.2                ha8417bf_1    conda-forge
flake8                    4.0.1              pyhd8ed1ab_1    conda-forge
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 hab24e00_0    conda-forge
fontconfig                2.13.96              heb65262_0    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
fonttools                 4.29.1           py39h5161555_0    conda-forge
freetype                  2.10.4               h17b34a0_1    conda-forge
freetype-py               2.2.0              pyh9f0ad1d_0    conda-forge
fribidi                   1.0.10               h27ca646_0    conda-forge
frozenlist                1.3.0                    pypi_0    pypi
fsspec                    2022.1.0           pyhd8ed1ab_0    conda-forge
gdk-pixbuf                2.42.6               hff60771_0    conda-forge
gettext                   0.19.8.1          h049c9fb_1008    conda-forge
giflib                    5.2.1                h27ca646_2    conda-forge
glib-tools                2.70.2               hccf11d3_2    conda-forge
gmp                       6.2.1                h9f76cd9_0    conda-forge
gnutls                    3.6.13               h706517b_1    conda-forge
graphite2                 1.3.13            h9f76cd9_1001    conda-forge
gtk3                      3.24.31              h2dc7dc9_2    conda-forge
harfbuzz                  3.1.1                h13b3495_0    conda-forge
heapdict                  1.0.1                      py_0    conda-forge
hicolor-icon-theme        0.17                 hce30654_2    conda-forge
hsluv                     5.0.2              pyh44b312d_0    conda-forge
icu                       68.2                 hbdafb3b_0    conda-forge
idna                      3.3                pyhd8ed1ab_0    conda-forge
imagecodecs               2021.11.20       py39hcb02aed_1    conda-forge
imageio                   2.10.5                   pypi_0    pypi
imageio-ffmpeg            0.4.5              pyhd8ed1ab_0    conda-forge
imagesize                 1.3.0              pyhd8ed1ab_0    conda-forge
importlib-metadata        4.2.0            py39h2804cbe_0    conda-forge
importlib_metadata        4.2.0                hd8ed1ab_0    conda-forge
importlib_resources       5.4.0              pyhd8ed1ab_0    conda-forge
intervaltree              3.0.2                      py_0    conda-forge
ipykernel                 6.9.0            py39h32adebf_0    conda-forge
ipython                   8.0.1            py39h2804cbe_0    conda-forge
ipython_genutils          0.2.0                      py_1    conda-forge
ipywidgets                7.6.5                    pypi_0    pypi
isort                     5.10.1             pyhd8ed1ab_0    conda-forge
jbig                      2.1               h3422bc3_2003    conda-forge
jedi                      0.18.1           py39h2804cbe_0    conda-forge
jinja2                    3.0.3              pyhd8ed1ab_0    conda-forge
jpeg                      9e                   h3422bc3_0    conda-forge
jsonschema                4.4.0              pyhd8ed1ab_0    conda-forge
jupyter                   1.0.0                    pypi_0    pypi
jupyter-console           6.4.0                    pypi_0    pypi
jupyter_client            7.1.2              pyhd8ed1ab_0    conda-forge
jupyter_core              4.9.1            py39h2804cbe_1    conda-forge
jupyterlab-pygments       0.1.2                    pypi_0    pypi
jupyterlab-widgets        1.0.2                    pypi_0    pypi
jupytext                  1.13.7                   pypi_0    pypi
jxrlib                    1.1                  h27ca646_2    conda-forge
kiwisolver                1.3.2            py39h4d2d688_1    conda-forge
krb5                      1.19.2               hd92b7a7_3    conda-forge
lame                      3.100             h27ca646_1001    conda-forge
lcms2                     2.12                 had6a04f_0    conda-forge
lerc                      3.0                  hbdafb3b_0    conda-forge
libaec                    1.0.6                hbdafb3b_0    conda-forge
libblas                   3.9.0           13_osxarm64_accelerate    conda-forge
libbrotlicommon           1.0.9                h3422bc3_6    conda-forge
libbrotlidec              1.0.9                h3422bc3_6    conda-forge
libbrotlienc              1.0.9                h3422bc3_6    conda-forge
libcblas                  3.9.0           13_osxarm64_accelerate    conda-forge
libcurl                   7.81.0               h8fe1914_0    conda-forge
libcxx                    12.0.1               h168391b_1    conda-forge
libdeflate                1.8                  h3422bc3_0    conda-forge
libedit                   3.1.20191231         hc8eb9b7_2    conda-forge
libev                     4.33                 h642e427_1    conda-forge
libffi                    3.4.2                h3422bc3_5    conda-forge
libgfortran               5.0.0.dev0      11_0_1_hf114ba7_23    conda-forge
libgfortran5              11.0.1.dev0         hf114ba7_23    conda-forge
libglib                   2.70.2               h67e64d8_2    conda-forge
libiconv                  1.16                 h642e427_0    conda-forge
libjpeg-turbo             2.1.1                h3422bc3_0    conda-forge
liblapack                 3.9.0           13_osxarm64_accelerate    conda-forge
liblapacke                3.9.0           13_osxarm64_accelerate    conda-forge
libnghttp2                1.46.0               he4cd7f6_0    conda-forge
libopenblas               0.3.18          openmp_h5dd58f0_0    conda-forge
libpng                    1.6.37               hf7e6567_2    conda-forge
libpq                     13.5                 h8bb6238_1    conda-forge
librsvg                   2.52.5               h957afdb_1    conda-forge
libsodium                 1.0.18               h27ca646_1    conda-forge
libssh2                   1.10.0               hb80f160_2    conda-forge
libtiff                   4.3.0                h74060c4_2    conda-forge
libwebp                   1.2.2                h0d20362_0    conda-forge
libwebp-base              1.2.2                h3422bc3_1    conda-forge
libxcb                    1.13              h9b22ae9_1004    conda-forge
libxml2                   2.9.12               h538f51a_0    conda-forge
libxslt                   1.1.33               hd2240da_2    conda-forge
libzlib                   1.2.11            hee7b306_1013    conda-forge
libzopfli                 1.0.3                h9f76cd9_0    conda-forge
llvm-openmp               12.0.1               hf3c4609_1    conda-forge
locket                    0.2.0                      py_2    conda-forge
loguru                    0.6.0                    pypi_0    pypi
lxml                      4.7.1            py39h3757d6e_0    conda-forge
lz4-c                     1.9.3                hbdafb3b_1    conda-forge
magicgui                  0.3.4              pyhd8ed1ab_0    conda-forge
markdown-it-py            1.1.0                    pypi_0    pypi
markupsafe                2.0.1            py39h5161555_1    conda-forge
matplotlib-base           3.5.1            py39h5aa4fe7_0    conda-forge
matplotlib-inline         0.1.3              pyhd8ed1ab_0    conda-forge
mccabe                    0.6.1                      py_1    conda-forge
mdit-py-plugins           0.3.0                    pypi_0    pypi
mistune                   0.8.4                    pypi_0    pypi
mrc                       0.2.0                    pypi_0    pypi
msgpack-python            1.0.3            py39h4d2d688_0    conda-forge
multidict                 6.0.2                    pypi_0    pypi
munkres                   1.1.4              pyh9f0ad1d_0    conda-forge
mypy_extensions           0.4.3            py39h2804cbe_4    conda-forge
mysql-common              8.0.28               hce30654_0    conda-forge
mysql-libs                8.0.28               h577abee_0    conda-forge
napari                    0.4.14             pyhd8ed1ab_0    conda-forge
napari-aicsimageio        0.4.1                    pypi_0    pypi
napari-console            0.0.4              pyhd8ed1ab_0    conda-forge
napari-plugin-engine      0.2.0              pyhd8ed1ab_2    conda-forge
napari-pyclesperanto-assistant 0.15.1                   pypi_0    pypi
napari-skimage-regionprops 0.2.9                    pypi_0    pypi
napari-svg                0.1.5              pyhd8ed1ab_0    conda-forge
napari-time-slicer        0.4.3                    pypi_0    pypi
napari-tools-menu         0.1.10                   pypi_0    pypi
napari-workflows          0.1.5                    pypi_0    pypi
nbclient                  0.5.10                   pypi_0    pypi
nbconvert                 6.4.2                    pypi_0    pypi
nbformat                  5.1.3                    pypi_0    pypi
ncurses                   6.3                  hc470f4d_0    conda-forge
nd2                       0.1.4                    pypi_0    pypi
nest-asyncio              1.5.4              pyhd8ed1ab_0    conda-forge
nettle                    3.6                  hc6a1b29_0    conda-forge
networkx                  2.6.3              pyhd8ed1ab_1    conda-forge
notebook                  6.4.8                    pypi_0    pypi
npe2                      0.1.2              pyhd8ed1ab_0    conda-forge
nspr                      4.32                 hbdafb3b_1    conda-forge
nss                       3.74                 h353d031_0    conda-forge
numcodecs                 0.9.1            py39hfb83b0d_2    conda-forge
numpy                     1.22.2           py39h61a45d2_0    conda-forge
numpydoc                  1.2                pyhd8ed1ab_0    conda-forge
ome-types                 0.2.9              pyhd8ed1ab_0    conda-forge
openblas                  0.3.18          openmp_h3b88efd_0    conda-forge
openh264                  2.1.1                habe5f53_0    conda-forge
openjpeg                  2.4.0                h062765e_1    conda-forge
openssl                   1.1.1l               h3422bc3_0    conda-forge
packaging                 21.3               pyhd8ed1ab_0    conda-forge
pandas                    1.4.0            py39h7f752ed_0    conda-forge
pandocfilters             1.5.0                    pypi_0    pypi
pango                     1.48.10              h26a1e14_2    conda-forge
parso                     0.8.3              pyhd8ed1ab_0    conda-forge
partd                     1.2.0              pyhd8ed1ab_0    conda-forge
pathspec                  0.9.0              pyhd8ed1ab_0    conda-forge
pcre                      8.45                 hbdafb3b_0    conda-forge
pexpect                   4.8.0              pyh9f0ad1d_2    conda-forge
pickleshare               0.7.5                   py_1003    conda-forge
pillow                    8.4.0                    pypi_0    pypi
pims                      0.5                pyh9f0ad1d_1    conda-forge
pint                      0.18               pyhd8ed1ab_0    conda-forge
pip                       22.0.3             pyhd8ed1ab_0    conda-forge
pixman                    0.40.0               h27ca646_0    conda-forge
platformdirs              2.4.1              pyhd8ed1ab_1    conda-forge
pooch                     1.6.0              pyhd8ed1ab_0    conda-forge
prometheus-client         0.13.1                   pypi_0    pypi
prompt-toolkit            3.0.26             pyha770c72_0    conda-forge
psutil                    5.9.0            py39h5161555_0    conda-forge
psygnal                   0.2.0            py39h4d2d688_1    conda-forge
pthread-stubs             0.4               h27ca646_1001    conda-forge
ptyprocess                0.7.0              pyhd3deb0d_0    conda-forge
pure_eval                 0.2.2              pyhd8ed1ab_0    conda-forge
pyclesperanto-prototype   0.15.0                   pypi_0    pypi
pycodestyle               2.8.0              pyhd8ed1ab_0    conda-forge
pycparser                 2.21               pyhd8ed1ab_0    conda-forge
pydantic                  1.9.0            py39h5161555_0    conda-forge
pyflakes                  2.4.0              pyhd8ed1ab_0    conda-forge
pygments                  2.11.2             pyhd8ed1ab_0    conda-forge
pyopencl                  2021.2.13                pypi_0    pypi
pyopengl                  3.1.5                      py_0    conda-forge
pyopenssl                 22.0.0             pyhd8ed1ab_0    conda-forge
pyparsing                 3.0.7              pyhd8ed1ab_0    conda-forge
pyperclip                 1.8.2                    pypi_0    pypi
pyqt                      5.15.4           py39h70deae4_1    andfoy
pyqt5-sip                 12.9.0           py39h70deae4_1    andfoy
pyrsistent                0.18.1           py39h5161555_0    conda-forge
pysocks                   1.7.1            py39h2804cbe_4    conda-forge
python                    3.9.10          hd16f9c5_2_cpython    conda-forge
python-dateutil           2.8.2              pyhd8ed1ab_0    conda-forge
python_abi                3.9                      2_cp39    conda-forge
pytomlpp                  1.0.10           py39h4d2d688_0    conda-forge
pytools                   2021.2.9                 pypi_0    pypi
pytz                      2021.3             pyhd8ed1ab_0    conda-forge
pyvkfft                   2022.1                   pypi_0    pypi
pywavelets                1.2.0            py39h20ef057_1    conda-forge
pyyaml                    6.0              py39h5161555_3    conda-forge
pyzmq                     22.3.0           py39h02c6a76_1    conda-forge
qt                        5.15.2               h70deae4_6    andfoy
qtconsole                 5.2.2              pyhd8ed1ab_1    conda-forge
qtconsole-base            5.2.2              pyhd8ed1ab_1    conda-forge
qtpy                      2.0.1              pyhd8ed1ab_0    conda-forge
readlif                   0.6.5                    pypi_0    pypi
readline                  8.1                  hedafd6a_0    conda-forge
requests                  2.27.1             pyhd8ed1ab_0    conda-forge
scikit-image              0.19.1           py39h7f752ed_0    conda-forge
scipy                     1.8.0            py39h5060c3b_1    conda-forge
send2trash                1.8.0                    pypi_0    pypi
setuptools                59.8.0           py39h2804cbe_0    conda-forge
shellingham               1.4.0              pyh44b312d_0    conda-forge
sip                       6.1.0            py39h8a0c2ca_2    andfoy
six                       1.16.0             pyh6c4a22f_0    conda-forge
slicerator                1.0.0                      py_0    conda-forge
snappy                    1.1.8                hc88da5d_3    conda-forge
snowballstemmer           2.2.0              pyhd8ed1ab_0    conda-forge
sortedcontainers          2.4.0              pyhd8ed1ab_0    conda-forge
sphinx                    4.3.2              pyh6c4a22f_0    conda-forge
sphinxcontrib-applehelp   1.0.2                      py_0    conda-forge
sphinxcontrib-devhelp     1.0.2                      py_0    conda-forge
sphinxcontrib-htmlhelp    2.0.0              pyhd8ed1ab_0    conda-forge
sphinxcontrib-jsmath      1.0.1                      py_0    conda-forge
sphinxcontrib-qthelp      1.0.3                      py_0    conda-forge
sphinxcontrib-serializinghtml 1.1.5              pyhd8ed1ab_1    conda-forge
sqlite                    3.37.0               h72a2b83_0    conda-forge
stack_data                0.1.4              pyhd8ed1ab_0    conda-forge
superqt                   0.2.5.post1        pyhd8ed1ab_0    conda-forge
tblib                     1.7.0              pyhd8ed1ab_0    conda-forge
terminado                 0.13.1                   pypi_0    pypi
testpath                  0.5.0                    pypi_0    pypi
tifffile                  2022.2.2           pyhd8ed1ab_0    conda-forge
tk                        8.6.11               he1e0b03_1    conda-forge
toml                      0.10.2             pyhd8ed1ab_0    conda-forge
tomli                     2.0.1              pyhd8ed1ab_0    conda-forge
toolz                     0.11.2             pyhd8ed1ab_0    conda-forge
tornado                   6.1              py39h5161555_2    conda-forge
tqdm                      4.62.3             pyhd8ed1ab_0    conda-forge
traitlets                 5.1.1              pyhd8ed1ab_0    conda-forge
transforms3d              0.3.1                    pypi_0    pypi
typed-ast                 1.5.2            py39h5161555_0    conda-forge
typer                     0.4.0              pyhd8ed1ab_0    conda-forge
typing-extensions         4.0.1                hd8ed1ab_0    conda-forge
typing_extensions         4.0.1              pyha770c72_0    conda-forge
tzdata                    2021e                he74cb21_0    conda-forge
unicodedata2              14.0.0           py39h5161555_0    conda-forge
urllib3                   1.26.8             pyhd8ed1ab_1    conda-forge
vispy                     0.9.6            py39h5861bad_0    conda-forge
wcwidth                   0.2.5              pyh9f0ad1d_2    conda-forge
webencodings              0.5.1                    pypi_0    pypi
wheel                     0.37.1             pyhd8ed1ab_0    conda-forge
widgetsnbextension        3.5.2                    pypi_0    pypi
wrapt                     1.13.3           py39h5161555_1    conda-forge
wurlitzer                 3.0.2                    pypi_0    pypi
x264                      1!161.3030           h3422bc3_1    conda-forge
xarray                    0.21.1             pyhd8ed1ab_0    conda-forge
xmlschema                 1.4.1              pyhd8ed1ab_0    conda-forge
xorg-libxau               1.0.9                h27ca646_0    conda-forge
xorg-libxdmcp             1.1.3                h27ca646_0    conda-forge
xz                        5.2.5                h642e427_1    conda-forge
yaml                      0.2.5                h3422bc3_2    conda-forge
yarl                      1.7.2                    pypi_0    pypi
zarr                      2.11.0             pyhd8ed1ab_0    conda-forge
zeromq                    4.3.4                hbdafb3b_1    conda-forge
zfp                       0.5.5                hcfdfaf5_8    conda-forge
zict                      2.0.0                      py_0    conda-forge
zipp                      3.7.0              pyhd8ed1ab_1    conda-forge
zlib                      1.2.11            hee7b306_1013    conda-forge
zstd                      1.5.2                h861e0a7_0    conda-forge

BTW, im curious about your pyqt5 and tensorflow 2.8 from pypi--is your M1 env an x86 rosetta one? That would be a pretty big difference from my arm64 env.

[haesleinhuepf]

-is your M1 env an x86 rosetta one?

How can I find that out?

[psobolewskiPhD]

You can use lipo -info on your python binary.

╰─ which python                                                   (napari-CL) ─╯
/Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/bin/python
╭─ ~ ···································································· ✔ ─╮
╰─ lipo -info /Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/bin/python

Non-fat file: /Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL/bin/python is architecture: arm64

Is your conda from conda-forge or anaconda? the latter is x86 only I believe. The former has arm64 (and is endorsed by Apple).

conda info:

 active environment : napari-CL
    active env location : /Users/piotrsobolewski/Dev/miniforge3/envs/napari-CL
            shell level : 2
       user config file : /Users/piotrsobolewski/.condarc
 populated config files : /Users/piotrsobolewski/Dev/miniforge3/.condarc
                          /Users/piotrsobolewski/.condarc
          conda version : 4.11.0
    conda-build version : not installed
         python version : 3.10.2.final.0
       virtual packages : __osx=12.1=0
                          __unix=0=0
                          __archspec=1=arm64
       base environment : /Users/piotrsobolewski/Dev/miniforge3  (writable)
      conda av data dir : /Users/piotrsobolewski/Dev/miniforge3/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/osx-arm64
                          https://conda.anaconda.org/conda-forge/noarch
          package cache : /Users/piotrsobolewski/Dev/miniforge3/pkgs
                          /Users/piotrsobolewski/.conda/pkgs
       envs directories : /Users/piotrsobolewski/Dev/miniforge3/envs
                          /Users/piotrsobolewski/.conda/envs
               platform : osx-arm64
             user-agent : conda/4.11.0 requests/2.27.1 CPython/3.10.2 Darwin/21.2.0 OSX/12.1
                UID:GID : 501:20
             netrc file : None
           offline mode : False

[haesleinhuepf]

You can use lipo -info on your python binary.

Non-fat file: /Users/haase/opt/anaconda3/envs/bio_39/bin/python is architecture: x86_64

I'm not sure how to proceed from here. My experience with rosetta and arm is limited.

[psobolewskiPhD]

So that confirms you're using x86 python env from anaconda, so if you're on an M1 mac it's running in emulation via so-called Rosetta2. This would suggest the issue I'm experiencing in my native arm64 env may be related to architecture differences between x86 and arm64.