coloc FOR INTEGRATIVE ANALYSIS

• This folder contains scripts to loop thorugh eQTL and biomarker datasets

Steps

• For eQTL and biomarker dataset: require data.frame in R with
• eQTL data (in any order): SNPID CHR POS ([BETA SE] or [PVAL]) N ProbeID # optional: Gene.name/ensemblID
• biom quant data (in any order): SNPID CHR POS ([BETA SE] or [PVAL]) N
• biom case control (in any order): SNPID CHR POS ([BETA SE] or [PVAL]) N Ncases
• MAF in at least one of the datasets
• Soon to add scripts for epigenetic annotations