Sitophilus oryzae reference genome - bioinformatic ressources

This repository is a collection or script and pipelines used to perform the analysis of the S. oryzae genome.

RNA-seq

To add

Transposable Elements (TE)

The TE folder contains 3 different packages:

• TE_Clustering: Combine TE consensus from multiple sources -- README
• TE_Trimming: Report genomic coverage of given TE consensus (require RepeatMasker analysis) -- README
• TE_colored_gff: Convert the RepeatMasker .out file in a colored gff3 -- README