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Feature support more cellranger indexes #118

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accumb3ns
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@accumb3ns accumb3ns commented May 4, 2022

10X released Visium Spatial for FFPE which uses the Dual Index Kit TS where indexes are provided to cellranger-mkfastq in the form SI-TS-*. This PR expands the regex to accept this index format.

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hi @clintval - wanted to make sure you saw this small proposed change with big implications for handling new 10X index names. i appreciate your time! thanks.

@clintval clintval merged commit a970bc8 into clintval:master Jun 7, 2022
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clintval commented Jun 7, 2022

I'll try to get a new release posted this week. Please bug me if that does not happen!!

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Thank you!

@accumb3ns accumb3ns deleted the feature-supportMoreCellrangerIndexes branch June 7, 2022 19:11
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hi @clintval - bugging you re: release :) - could you push this when possible? much appreciated!

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@accumb3ns should be done! Bioconda will pick up the update automatically in a short amount of time but 0.13.0 should be on PyPi now.

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