Improvements to the Conda package (#17)

.codecov.yml

@@ -0,0 +1,19 @@
+coverage:
+  precision: 1
+  round: down
+  status:
+    project:
+      default:
+        enabled: yes
+        target: 95%
+        threshold: 0.25%
+    patch:
+      default:
+        target: auto
+
+comment:
+  layout: "diff"
+  behavior: default
+  require_changes: no
+  require_base: no
+  require_head: yes

README.md

@@ -4,6 +4,7 @@
 [![codecov](https://codecov.io/gh/clintval/snakescale/branch/master/graph/badge.svg)](https://codecov.io/gh/clintval/snakescale)
 [![Documentation Build Status](https://readthedocs.org/projects/snakescale/badge/?version=latest)](https://snakescale.readthedocs.io/en/latest/?badge=latest)
 [![PyPi Release](https://badge.fury.io/py/snakescale.svg)](https://badge.fury.io/py/snakescale)
+[![Anaconda-Server Badge](https://anaconda.org/clintval/snakescale/badges/version.svg)](https://anaconda.org/clintval/snakescale)
 [![Python Versions](https://img.shields.io/pypi/pyversions/snakescale.svg)](https://pypi.python.org/pypi/snakescale/)
 [![MyPy Checked](http://www.mypy-lang.org/static/mypy_badge.svg)](http://mypy-lang.org/)
 [![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/ambv/black)

conda-recipe/meta.yaml

@@ -1,16 +1,17 @@
 {% set name = "snakescale" %}
-{% set version = "0.3.0" %}
+{% set version = "0.4.0" %}
 
 package:
   name: "{{ name|lower }}"
   version: "{{ version }}"
 
 source:
-  #url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  #sha256: cf7775431ab352a3f2bf957ca0ab4ea93560ba0e1fa1dddeccf4269d077dfca1
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: 4cf5b989aef26491a618d8fa3339f936da16f6a9e4237f8fe6a94e4ae34d0540
 
 build:
   number: 0
+  noarch: python
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
 
 requirements:

docs/conf.py

@@ -18,9 +18,9 @@
 author = 'clintval'
 
 # The short X.Y version
-version = '0.3'
+version = '0.4'
 # The full version, including alpha/beta/rc tags
-release = '0.3.0'
+release = '0.4.0'
 
 # -- General configuration ---------------------------------------------------
 

setup.py

@@ -4,7 +4,7 @@
 from pathlib import Path
 
 PACKAGE = 'snakescale'
-VERSION = '0.3.0'
+VERSION = '0.4.0'
 
 setuptools.setup(
     name=PACKAGE,

snakescale/__init__.py

@@ -18,7 +18,7 @@
 
 DEFAULT_SCALE_FILENAME = 'wrapper.py'
 DEFAULT_SCALE_VERSION = 'latest'
-WRAPPER_ROOT_PATH = Path(__file__).parent.parent / 'wrappers'
+WRAPPER_ROOT_PATH = Path(__file__).parent / 'wrappers'
 
 AVAILABLE_WRAPPER_VERSIONS = set(map(lambda _: _.name, WRAPPER_ROOT_PATH.glob('*')))
 

snakescale/wrappers/latest/bedtools/subtract/environment.yaml

@@ -0,0 +1,6 @@
+channels:
+  - clinval
+  - bioconda
+dependencies:
+  - snakescale
+  - bedtools

tests/conftest.py

@@ -0,0 +1,10 @@
+from snakescale import WRAPPER_ROOT_PATH, DEFAULT_SCALE_FILENAME
+
+collect_ignore = ['setup.py']
+
+print(WRAPPER_ROOT_PATH)
+
+for path in WRAPPER_ROOT_PATH.rglob(DEFAULT_SCALE_FILENAME):
+    collect_ignore.append(str(path))
+
+print(collect_ignore)