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Merge pull request #247 from clulab/kwalcock/ghana
Recover the data from Ghana
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src/main/scala/org/clulab/habitus/apps/elasticsearch/Step2InputEidos1GhanaApp.scala
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,144 @@ | ||
| package org.clulab.habitus.apps.elasticsearch | ||
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| import ai.lum.common.FileUtils._ | ||
| import org.clulab.habitus.apps.utils.{AttributeCounts, JsonRecord} | ||
| import org.clulab.processors.{Document, Sentence} | ||
| import org.clulab.utils.Sourcer | ||
| import org.clulab.wm.eidos.document.AnnotatedDocument | ||
| import org.clulab.wm.eidos.serialization.jsonld.JLDDeserializer | ||
| import org.clulab.wm.eidoscommon.utils.{FileEditor, FileUtils, Logging, TsvReader, TsvWriter} | ||
| import org.json4s.DefaultFormats | ||
| import org.json4s.jackson.JsonMethods | ||
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| import java.io.File | ||
| import scala.util.Using | ||
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| object Step2InputEidos1GhanaApp extends App with Logging { | ||
| implicit val formats: DefaultFormats.type = org.json4s.DefaultFormats | ||
| val contextWindow = 3 | ||
| val datasetFilename = "../corpora/ghana-elasticsearch/dataset55k.tsv" | ||
| val baseDirectory = "/home/kwa/data/Corpora/habitus-project/corpora/multimix" | ||
| val outputFileName = "../corpora/ghana-elasticsearch/ghana-elasticsearch.tsv" | ||
| val deserializer = new JLDDeserializer() | ||
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| def getDatasetUrls(): Set[String] = { | ||
| // TODO: Also get terms from here instead of from directory names. | ||
| val datasetUrls = Using.resource(Sourcer.sourceFromFilename(datasetFilename)) { source => | ||
| val tsvReader = new TsvReader() | ||
| val datasetUrls = source.getLines.drop(1).map { line => | ||
| val Array(url) = tsvReader.readln(line, 1) | ||
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| url | ||
| }.toSet | ||
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| datasetUrls | ||
| } | ||
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| datasetUrls | ||
| } | ||
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| def jsonFileToJsonld(jsonFile: File): File = | ||
| FileEditor(jsonFile).setExt("jsonld").get | ||
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| def jsonFileToRecord(jsonFile: File): JsonRecord = { | ||
| val json = FileUtils.getTextFromFile(jsonFile) | ||
| val jValue = JsonMethods.parse(json) | ||
| val url = (jValue \ "url").extract[String] | ||
| val titleOpt = (jValue \ "title").extractOpt[String] | ||
| val datelineOpt = (jValue \ "dateline").extractOpt[String] | ||
| val bylineOpt = (jValue \ "byline").extractOpt[String] | ||
| val text = (jValue \ "text").extract[String] | ||
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| // Don't use them all in order to save space. | ||
| JsonRecord(url, None, None, None, "") | ||
| } | ||
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| def jsonldFileToAnnotatedDocument(jsonldFile: File): AnnotatedDocument = { | ||
| val json = FileUtils.getTextFromFile(jsonldFile) | ||
| val corpus = deserializer.deserialize(json) | ||
| val annotatedDocument = corpus.head | ||
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| annotatedDocument | ||
| } | ||
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| def rawTextToCleanText(rawText: String): String = rawText | ||
| .trim | ||
| .replaceAll("\r\n", " ") | ||
| .replaceAll("\n", " ") | ||
| .replaceAll("\r", " ") | ||
| .replaceAll("\t", " ") | ||
| .replaceAll("\u2028", " ") // unicode line separator | ||
| .replaceAll("\u2029", " ") // unicode paragraph separator | ||
| .map { letter => | ||
| if (letter.toInt < 32) ' ' | ||
| else letter | ||
| } | ||
| .trim | ||
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| def getSentenceText(document: Document, sentence: Sentence): String = { | ||
| val rawText = document.text.get.slice(sentence.startOffsets.head, sentence.endOffsets.last) | ||
| val cleanText = rawTextToCleanText(rawText) | ||
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| cleanText | ||
| } | ||
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| def attributeCountsToTsvWriter(attributeCounts: AttributeCounts, tsvWriter: TsvWriter): Unit = { | ||
| tsvWriter.print( | ||
| attributeCounts.increaseCount.toString, attributeCounts.decreaseCount.toString, | ||
| attributeCounts.posChangeCount.toString, attributeCounts.negChangeCount.toString, | ||
| "" | ||
| ) | ||
| } | ||
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| val datasetUrls: Set[String] = getDatasetUrls | ||
| val jsonFilesAndUrls: Seq[(File, String)] = { | ||
| val allJsonFiles = new File(baseDirectory).listFilesByWildcard("*.json", recursive = true).toVector | ||
| val jsonFilesWithJsonld = allJsonFiles.filter { jsonFile => | ||
| jsonFileToJsonld(jsonFile).exists | ||
| } | ||
| val jsonFilesAndUrls: Seq[(File, String)] = jsonFilesWithJsonld.map { jsonFile => | ||
| val record = jsonFileToRecord(jsonFile) | ||
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| (jsonFile, record.url) | ||
| } | ||
| val headJsonFilesAndUrls = jsonFilesAndUrls.groupBy(_._2).map(_._2.head).toSeq | ||
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| headJsonFilesAndUrls | ||
| } | ||
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| Using.resource(FileUtils.printWriterFromFile(outputFileName)) { printWriter => | ||
| val tsvWriter = new TsvWriter(printWriter) | ||
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| tsvWriter.println("url", "sentenceIndex", "sentence", "context", "prevSentence") | ||
| datasetUrls.zipWithIndex.foreach { case (url, index) => | ||
| val jsonFile = jsonFilesAndUrls.find(_._2 == url).get._1 | ||
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| println(s"$index ${jsonFile.getPath}") | ||
| try { | ||
| val jsonldFile = jsonFileToJsonld(jsonFile) | ||
| val annotatedDocument = jsonldFileToAnnotatedDocument(jsonldFile) | ||
| val document = annotatedDocument.document | ||
| val sentences = document.sentences | ||
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| sentences.zipWithIndex.foreach { case (sentence, sentenceIndex) => | ||
| val cleanText = getSentenceText(document, sentence) | ||
| val context = sentences | ||
| .slice(sentenceIndex - contextWindow, sentenceIndex + contextWindow + 1) | ||
| .map(getSentenceText(document, _)) | ||
| .mkString(" ") | ||
| val prevSentenceText = sentences | ||
| .lift(sentenceIndex - 1) | ||
| .map(getSentenceText(document, _)) | ||
| .getOrElse("") | ||
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| tsvWriter.println(url, sentenceIndex.toString, cleanText, context, prevSentenceText) | ||
| } | ||
| } | ||
| catch | ||
| { | ||
| case throwable: Throwable => | ||
| logger.error(s"Exception for file $jsonFile", throwable) | ||
| } | ||
| } | ||
| } | ||
| } |
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