This respository contains scripts to reproduce the data presented in Van Cruchten & Van As et al (2022) [link to paper]

bash_scripts

contains bash scripts to perform raw data processing, generate count tables and perform alternative splicing analysis.

R_scripts

contains R scripts of statistical modelling and to create figures

Statistical modeling results

contains the result tables of the statistical analyses of the RNA-seq data presented in the paper

Raw data is available via EGA (www.ega-archive.org) under study ID EGAS00001005830, accession ID EGAD00001008383