OMERO #83

	name: OMERO
	on:
	push:
	pull_request:
	schedule:
	- cron: '0 0 * * 0'

	jobs:
	test:
	name: Run integration tests against OMERO
	runs-on: ubuntu-latest
	env:
	STAGE: cli
	steps:
	- uses: actions/checkout@v3
	- name: Launch OMERO test database
	run: sudo chmod +x .omero/* && .omero/compose up -d
	env:
	ROOTPASS: omero
	POSTGRES_IMAGE: postgres
	POSTGRES_VERSION: 10
	POSTGRES_PASSWORD: postgres
	OMERO_SERVER_IMAGE: openmicroscopy/omero-server
	OMERO_SERVER_VERSION: 5
	OMERO_SERVER_TCP: "4063:"
	OMERO_SERVER_SSL: "4064:"
	OMERO_WEB_IMAGE: openmicroscopy/omero-web-standalone
	OMERO_WEB_VERSION: 5
	OMERO_WEB_PORT: "4080:"
	BUILD_IMAGE: adoptopenjdk:11-jdk-hotspot-bionic
	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: "3.8"
	- name: Build omero_arc
	run: \|
	$CONDA/bin/conda install -c anaconda python=3.8
	$CONDA/bin/conda install -c conda-forge zeroc-ice=3.6.5
	$CONDA/bin/python -m pip install "omero-cli-transfer @ git+https://github.com/ome/omero-cli-transfer@main"
	$CONDA/bin/python -m pip install .[dev]
	- name: Install omero_arc dependencies
	run: \|
	wget --quiet https://github.com/nfdi4plants/arcCommander/releases/download/v0.5.0-linux.x64/arc
	mkdir $HOME/bin
	mv arc $HOME/bin/
	chmod a+x $HOME/bin/arc
	export PATH="$HOME/bin:$PATH"
	arc --version
	- name: Run tests
	run: \|
	$CONDA/bin/conda install pytest
	export PATH="$CONDA/bin:$PATH"
	export PATH="$HOME/bin:$PATH"
	$CONDA/bin/pytest -v
	env:
	OMERODIR: .
	ICE_CONFIG: test/ice.config
	- name: Stop OMERO test database
	run: "sudo .omero/compose down"

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