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DESCRIPTION
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DESCRIPTION
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Package: imprinting
Type: Package
Title: Calculate Birth Year-Specific Probabilities of Immune Imprinting to Influenza
Version: 0.1.1
Authors@R:
c(person(given = "Katelyn",
family = "Gostic",
role = c("aut"),
email = "kgostic@uchicago.edu"),
person(given = "Alex",
family = "Byrnes",
role = c("ctb", "cre"),
email = "abyrnes@uchicago.edu"))
Description: Reconstruct birth-year specific probabilities of immune imprinting to influenza A, using the methods of Gostic et al. (2016) <doi:10.1126/science.aag1322>. Plot, save, or export the calculated probabilities for use in your own research. By default, the package calculates subtype-specific imprinting probabilities, but with user-provided frequency data, it is possible to calculate probabilities for arbitrary kinds of primary exposure to influenza A, including primary vaccination and exposure to specific clades, strains, etc.
License: MIT + file LICENSE
Encoding: UTF-8
Imports:
dplyr (>= 1.0.9),
tidyr (>= 1.2.0),
cowplot (>= 1.0.0),
ggplot2,
tidyselect
Depends:
R (>= 3.5.0)
Suggests:
knitr,
rmarkdown,
testthat (>= 3.0.0),
devtools
Config/testthat/edition: 3
RoxygenNote: 7.2.2
Roxygen: list(markdown = TRUE)
VignetteBuilder: knitr
URL: https://cobeylab.github.io/imprinting/
BugReports: https://github.com/cobeylab/imprinting/issues