Alembic fix

alembic_fix

@@ -0,0 +1,41 @@
+#!/bin/bash
+
+CONTAINER=$(docker ps -f name=graphql-postgres --format {{.Names}})
+if [ -z $CONTAINER ]; then
+    echo "Could not find a running container for the database."
+    exit 1
+fi
+
+
+TABLE_EXISTS=$(docker exec $CONTAINER psql -d postgresql://postgres:onetask@graphql-postgres:5432 -c "SELECT COUNT(*) FROM  pg_tables WHERE schemaname = 'public' AND tablename  = 'alembic_version';" -qtAX)
+if [ $TABLE_EXISTS -eq 0 ]
+then
+    echo "Table alembic_version does not exist. Creating..."
+    docker exec $CONTAINER psql -d postgresql://postgres:onetask@graphql-postgres:5432 -c "CREATE TABLE alembic_version (version_num VARCHAR(32) NOT NULL, PRIMARY KEY (version_num))" -qtAX
+    echo "Table created."
+else
+    return 0
+fi
+
+
+echo "Checking revision..."
+if [ $(docker exec $CONTAINER psql -d postgresql://postgres:onetask@graphql-postgres:5432 -c "SELECT COUNT(*) FROM information_schema.columns WHERE table_name='attribute' and column_name='source_code';" -qtAX) -ne 0 ]
+then
+    echo "Set revision to 87f463aa5112"
+    docker exec $CONTAINER psql -d postgresql://postgres:onetask@graphql-postgres:5432 -c "INSERT INTO alembic_version VALUES('87f463aa5112')" -qtAX
+elif [ $(docker exec $CONTAINER psql -d postgresql://postgres:onetask@graphql-postgres:5432 -c "SELECT COUNT(*) FROM  pg_tables WHERE schemaname = 'public' AND tablename  = 'labeling_access_link';" -qtAX) -ne 0 ]
+then
+    echo "Set revision to 9618924f9679"
+    docker exec $CONTAINER psql -d postgresql://postgres:onetask@graphql-postgres:5432 -c "INSERT INTO alembic_version VALUES('9618924f9679')" -qtAX
+elif [ $(docker exec $CONTAINER psql -d postgresql://postgres:onetask@graphql-postgres:5432 -c "SELECT COUNT(*) FROM  pg_tables WHERE schemaname = 'public' AND tablename  = 'app_version';" -qtAX) -ne 0 ]
+then
+    echo "Set revision to 5b3a4deea1c4"
+    docker exec $CONTAINER psql -d postgresql://postgres:onetask@graphql-postgres:5432 -c "INSERT INTO alembic_version VALUES('5b3a4deea1c4')" -qtAX
+elif [ $(docker exec $CONTAINER psql -d postgresql://postgres:onetask@graphql-postgres:5432 -c "SELECT COUNT(*) FROM  pg_tables WHERE schemaname = 'public' AND tablename  = 'organization';" -qtAX) -ne 0 ]
+then
+    echo "Set revision to 992352f4c1f9"
+    docker exec $CONTAINER psql -d postgresql://postgres:onetask@graphql-postgres:5432 -c "INSERT INTO alembic_version VALUES('992352f4c1f9')" -qtAX
+else
+    echo "Nothing found assuming inital db"
+    docker exec $CONTAINER psql -d postgresql://postgres:onetask@graphql-postgres:5432 -c "DROP TABLE alembic_version" -qtAX
+fi

alembic_fix.bat

@@ -0,0 +1,94 @@
+@echo off
+
+SET name=initial
+FOR /F "tokens=*" %%g IN ('"docker ps -f name=graphql-postgres --format {{.Names}}"') do (SET name=%%g)
+
+IF "%name%" == "initial" (
+	echo cant find name
+	goto :eof
+)
+
+FOR /F "tokens=*" %%g IN ('docker exec %name% psql -d postgresql://postgres:onetask@graphql-postgres:5432 -c "SELECT COUNT(*) FROM  pg_tables WHERE schemaname = 'public' AND tablename  = 'alembic_version';" -qtAX') do (SET result=%%g)
+
+IF "%result%" == "0" (
+	echo creating table
+	docker exec %name% psql -d postgresql://postgres:onetask@graphql-postgres:5432 -c "CREATE TABLE alembic_version (version_num VARCHAR(32) NOT NULL, PRIMARY KEY (version_num))" -qtAX
+	echo table created
+) ELSE (
+	goto :eof
+)
+
+goto VERSION_87f463aa5112
+
+
+
+:END
+
+goto :eof
+
+:VERSION_87f463aa5112
+
+echo checking version 87f463aa5112
+
+FOR /F "tokens=*" %%g IN ('docker exec %name% psql -d postgresql://postgres:onetask@graphql-postgres:5432 -c "SELECT COUNT(*) FROM information_schema.columns WHERE table_name='attribute' and column_name='source_code';" -qtAX') do (SET result=%%g)
+
+IF "%result%" == "0" (
+	goto VERSION_9618924f9679
+) ELSE (
+	Call :setVersion 87f463aa5112
+	goto END
+)
+
+:VERSION_9618924f9679
+echo checking version 9618924f9679
+FOR /F "tokens=*" %%g IN ('docker exec %name% psql -d postgresql://postgres:onetask@graphql-postgres:5432 -c "SELECT COUNT(*) FROM  pg_tables WHERE schemaname = 'public' AND tablename  = 'labeling_access_link';" -qtAX') do (SET result=%%g)
+
+IF "%result%" == "0" (
+	goto VERSION_5b3a4deea1c4
+) ELSE (
+	Call :setVersion 9618924f9679
+	goto END
+)
+
+:VERSION_5b3a4deea1c4
+echo checking version 5b3a4deea1c4
+FOR /F "tokens=*" %%g IN ('docker exec %name% psql -d postgresql://postgres:onetask@graphql-postgres:5432 -c "SELECT COUNT(*) FROM  pg_tables WHERE schemaname = 'public' AND tablename  = 'app_version';" -qtAX') do (SET result=%%g)
+
+IF "%result%" == "0" (
+	goto VERSION_992352f4c1f9
+) ELSE (
+	Call :setVersion 5b3a4deea1c4
+	goto END
+)
+
+:VERSION_992352f4c1f9
+echo checking version 992352f4c1f9
+FOR /F "tokens=*" %%g IN ('docker exec %name% psql -d postgresql://postgres:onetask@graphql-postgres:5432 -c "SELECT COUNT(*) FROM  pg_tables WHERE schemaname = 'public' AND tablename  = 'organization';" -qtAX') do (SET result=%%g)
+
+IF "%result%" == "0" (
+	goto NO_VERSION
+) ELSE (
+	Call :setVersion 992352f4c1f9
+	goto END
+)
+
+:NO_VERSION
+echo nothing found assuming inital db
+docker exec %name% psql -d postgresql://postgres:onetask@graphql-postgres:5432 -c "DROP TABLE alembic_version" -qtAX	
+goto END
+
+
+:setVersion
+Set "version=%~1"
+
+FOR /F "tokens=*" %%g IN ('docker exec %name% psql -d postgresql://postgres:onetask@graphql-postgres:5432 -c "SELECT COUNT(*) FROM alembic_version;" -qtAX') do (SET result=%%g)
+
+IF "%result%" == "0" (	
+	echo setting version to %version%
+	docker exec %name% psql -d postgresql://postgres:onetask@graphql-postgres:5432 -c "INSERT INTO alembic_version VALUES('%version%')" -qtAX	
+	echo version is %version%
+)
+
+
+
+EXIT /B 0

start

@@ -1,10 +1,5 @@
 #!/bin/bash
 
-echo "We are currently experiencing some issues with refinery."
-echo "We are working on it. Sorry, for the inconvenience."
-echo "If you pull the repository and this message is still there, please try to pull it at a later time."
-exit 1
-
 LOCAL_VOLUME_POSTGRES=./postgres-data
 LOCAL_VOLUME_MINIO=./minio-data
 LOCAL_VOLUME_QDRANT=./qdrant-storage
@@ -49,6 +44,9 @@ if [ ! -f "./refinery/oathkeeper/jwks.json" ]; then
     docker run --rm docker.io/oryd/oathkeeper:v0.38 credentials generate --alg RS256 > refinery/oathkeeper/jwks.json
 fi
 
+source wait_until_db_ready
+source alembic_fix
+
 docker-compose -f refinery/docker-compose.yml up -d 
 
 echo "UI:           http://localhost:4455/app/"

start.bat

@@ -1,11 +1,6 @@
 @echo off
 setlocal enabledelayedexpansion
 
-echo "We are currently experiencing some issues with refinery."
-echo "We are working on it. Sorry, for the inconvenience."
-echo "If you pull the repository and this message is still there, please try to pull it at a later time."
-exit 1
-
 set LOCAL_VOLUME_POSTGRES=".\postgres-data"
 set LOCAL_VOLUME_MINIO=".\minio-data"
 set LOCAL_VOLUME_QDRANT=".\qdrant-storage"
@@ -68,6 +63,8 @@ IF NOT EXIST .\refinery\oathkeeper\jwks.json (
    docker run --rm docker.io/oryd/oathkeeper:v0.38 credentials generate --alg RS256 > refinery\oathkeeper\jwks.json
 )
 
+call wait_until_db_ready.bat
+call alembic_fix.bat
 
 docker-compose -f refinery\docker-compose.yml up -d
 

stop

@@ -1,8 +1,3 @@
 #!/bin/bash
 
-echo "We are currently experiencing some issues with refinery."
-echo "We are working on it. Sorry, for the inconvenience."
-echo "If you pull the repository and this message is still there, please try to pull it at a later time."
-exit 1
-
 docker-compose -f refinery/docker-compose.yml down --remove-orphans 

stop.bat

@@ -1,9 +1,5 @@
 @echo off
 
-echo "We are currently experiencing some issues with refinery."
-echo "We are working on it. Sorry, for the inconvenience."
-echo "If you pull the repository and this message is still there, please try to pull it at a later time."
-exit 1
 
 docker-compose -f refinery\docker-compose.yml down --remove-orphans
 if "%1" neq "update" pause

update

@@ -1,10 +1,5 @@
 #!/bin/bash
 
-echo "We are currently experiencing some issues with refinery."
-echo "We are working on it. Sorry, for the inconvenience."
-echo "If you pull the repository and this message is still there, please try to pull it at a later time."
-exit 1
-
 echo "Checking refinery installation..."
 if test -f "./refinery/docker-compose.yml"; then
     echo "Refinery is installed."

update.bat

@@ -1,10 +1,6 @@
 @echo off
 setlocal enabledelayedexpansion
 
-echo "We are currently experiencing some issues with refinery."
-echo "We are working on it. Sorry, for the inconvenience."
-echo "If you pull the repository and this message is still there, please try to pull it at a later time."
-exit 1
 
 echo Checking refinery installation...
 if exist "%~dp0\refinery\docker-compose.yml" (

wait_until_db_ready

@@ -0,0 +1,19 @@
+#!/bin/bash
+echo "Starting db..."
+
+docker-compose -f refinery/docker-compose.yml up -d graphql-postgres
+
+CONTAINER=$(docker ps -f name=graphql-postgres --format {{.Names}})
+if [ -z $CONTAINER ]; then
+    echo "Could not find a running container for the database."
+    exit 1
+fi
+
+echo "Waiting for container to be ready..."
+docker exec $CONTAINER pg_isready > /dev/null 2>&1
+while [ $? -ne 0 ]
+do
+    docker exec $CONTAINER pg_isready > /dev/null 2>&1
+done
+
+echo "db ready"

wait_until_db_ready.bat

@@ -0,0 +1,25 @@
+@echo off
+
+echo starting db...
+
+docker-compose -f refinery\docker-compose.yml up -d graphql-postgres
+
+SET name=initial
+FOR /F "tokens=*" %%g IN ('"docker ps -f name=graphql-postgres --format {{.Names}}"') do (SET name=%%g)
+
+IF "%name%" == "initial" (
+	echo cant find name
+	goto :eof
+)
+
+echo waiting for pg_isready...
+
+:RECHECK
+docker exec %name% pg_isready > nul
+IF %ERRORLEVEL% NEQ 0 ( 
+	timeout 1 > nul
+	goto RECHECK
+)
+
+echo db ready.
+