Merge pull request #380 from wjjmjh/304_fast_slow_dist_full_setting

repr() of app.dist.fast_slow_dist showing full setting, fixes #304
cogent3 · Nov 14, 2019 · 9567522 · 9567522
2 parents 3947582 + 3f49ddf
commit 9567522
Show file tree

Hide file tree

Showing 2 changed files with 2 additions and 1 deletion.
diff --git a/src/cogent3/app/dist.py b/src/cogent3/app/dist.py
@@ -36,6 +36,7 @@ def __init__(self, distance=None, moltype=None, fast_calc=None, slow_calc=None):
             output_types=(PAIRWISE_DISTANCE_TYPE, SERIALISABLE_TYPE),
             data_types=("ArrayAlignment", "Alignment"),
         )
+        self._formatted_params()
         self._moltype = moltype if moltype is None else get_moltype(moltype)
         self._sm = None
 

diff --git a/tests/test_app/test_tree.py b/tests/test_app/test_tree.py
@@ -77,7 +77,7 @@ def test_composable_apps(self):
         proc = fast_slow_dist + quick
         self.assertEqual(
             str(proc),
-            "fast_slow_dist(type='distance') + quick_tree(type='tree', drop_invalid=False)",
+            "fast_slow_dist(type='distance', distance=None, moltype='dna', fast_calc='hamming', slow_calc=None) + quick_tree(type='tree', drop_invalid=False)",
         )
         self.assertIsInstance(proc, tree_app.quick_tree)
         self.assertEqual(proc._type, "tree")