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No. _SequenceCollectionBase is an artefact of needing core methods on both SequenceCollection (from which Alignment directly inherits) and ArrayAlignment (which inherits directly from _SequenceCollectionBase).
In new_alignment.py, define a SequenceCollection class without any reference to alignment.py classes. All it has to begin with is a constructor and .seqs attribute.
Waiting on #1866
_seq_data
attributeself._seq_data.seq_maker = self.moltype.make_seq
seqs
property which returns the_seq_data
test_alignment.py
intotest_new_alignment.py
, converting them into pytest style (sorry!)named_seqs
property, which just returns.seqs
. Deprecate this method and point to just using.seqs
(give this 12 months).The text was updated successfully, but these errors were encountered: