Skip to content
Python pipeline for neuroimaging data
Branch: master
Clone or download
Latest commit 49ee012 Aug 21, 2019
Type Name Latest commit message Commit time
Failed to load latest commit information.
clpipe Update Aug 21, 2019
dist Susan Final Fixes Aug 16, 2019
docs Update configfiles.rst Aug 16, 2019
.gitignore Update .gitignore Mar 15, 2019 First commit of preprocessing function Jan 14, 2019 Update Feb 8, 2019 Added get available atlases Aug 16, 2019



Python pipeline for neuroimaging data. Draft documentation at

This pipeline is under development, and should not be used quite yet. If you are interested in contributing, please get in contact with Teague Henry (

Installation Guide for UNC-CH

  1. Open a Longleaf terminal session
  2. Switch to python 3.6.6 using module add python/3.6.6
  3. Install clpipe from GitHub with pip3 install --user --upgrade git+git://

All necessary dependencies should install to your local Python library, and the console commands should be immediately useable.

You can’t perform that action at this time.