notebooks.rst

NoteBooks

ipython notebook can be downloaded from this section. You can either see the results via nbviewer, or download and run them yourself. To do so, download the notebook and open a shell where is saved the file. Type:

ipython notebook

You should see the notebook name. Click on it and you are ready to try. Cels can be executed by typing CTRL+enter

UniProt

Here is a ipython notebook dedicated to UniProt, which can be downloaded notebooks/UniProt.ipynb or view its results on uniprot nbviewer

BioModels

Here is a ipython notebook dedicated to BioModels, which can be downloaded notebooks/BioModels.ipynb or view its results on biomodels nbviewer

ChEMBL

Here is a ipython notebook dedicated to ChEMBL, which can be downloaded notebooks/ChEMBL.ipynb or view its results on chembl nbviewer

Entrez/Eutils

Here is a ipython notebook dedicated to EUtils, which can be downloaded notebooks/Entrez_EUtils.ipynb or view its results on eutil nbviewer

KEGG

Here is a ipython notebook dedicated to KEGG, which can be downloaded notebooks/KEGG.ipynb or view its results on kegg nbviewer

MUSCLE

Here is a ipython notebook dedicated to MUSCLE, which can be downloaded notebooks/MUSCLE.ipynb or view its results on muscle nbviewer

NCBIBlast

Here is a ipython notebook dedicated to NCBIblast, which can be downloaded notebooks/NCBIBlast.ipynb or view its results on ncbiblast nbviewer

WikiPathway

Here is a ipython notebook dedicated to WikiPathway, which can be downloaded notebooks/WikiPathway.ipynb or view its results on wikipathway nbviewer

Gene Mapping

Here is a ipython notebook dedicated to Gene Mapping, which can be downloaded notebooks/Gene_Mapping.ipynb or view its results on gene mapping nbviewer

BioMart

Here is a ipython notebook dedicated to BioMart, which can be downloaded notebooks/BioMart or view its results on chembl biomiart

Ensembl

Here is a ipython notebook dedicated to Ensembl, which can be downloaded notebooks/Ensembl.ipynb or view its results on ensembl nbviewer