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sequana and bioservices updates
💭
sequana and bioservices updates
136 followers · 58 following

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Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: YOLOAchievement: Arctic Code Vault ContributorAchievement: Starstruckx2Achievement: Pull Sharkx3
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cokelaer/README.md

Hi there

  • 🔭 I’m currently actively working on Sequana and also maintaining BioServices, Damona, Fitter, colormap, spectrum, Bioconvert and easydev.
  • I'm currently leading the bioinformatics and data management activities of the Biomics NGS platform (biomics.pasteur.fr) building pipelines and tools for production.
  • 👯 I’m looking to collaborate on BioConvert, BioServices and Damona and of course Sequana. Would you be interested to take the lead on Spectrum, fitter, colormap, please let me know.

Pinned

  1. spectrum spectrum Public

    Spectral Analysis in Python

    Python 312 86

  2. bioservices bioservices Public

    Access to Biological Web Services from Python.

    Python 260 61

  3. sequana/sequana sequana/sequana Public

    Sequana: a set of Snakemake NGS pipelines

    Jupyter Notebook 132 27

  4. fitter fitter Public

    Fit data to many distributions

    Python 335 51

  5. colormap colormap Public

    Utilities to visualise and create matplotlib colormaps and various color codecs

    Jupyter Notebook 33 8

  6. bioconvert/bioconvert bioconvert/bioconvert Public

    Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

    Python 344 42

1,262 contributions in the last year

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Activity overview

Contributed to sequana/sequana, cokelaer/damona, sequana/sequana_pipetools and 39 other repositories
A graph representing cokelaer's contributions from November 27, 2022 to December 03, 2023. The contributions are 71% commits, 14% pull requests, 11% issues, 4% code review.

Contribution activity

December 2023

Created 5 commits in 3 repositories
Opened 2 pull requests in 2 repositories
sequana/nanomerge 1 merged
sequana/sequana_pipetools 1 merged

Created an issue in sequana/sequana_pipetools that received 1 comment

deprecated/useless functions

In sequana_manager, some functions are useless / not used : get_locaiton_pipeline, guess_scheduler, get_package_location

1 comment
Opened 1 other issue in 1 repository
sequana/sequana_pipetools 1 closed
4 contributions in private repositories Dec 1 – Dec 2

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