Evolutionary biology in R (last update: 2023-5-13)
citation:
*Michelle M. Jonika, Maximos Chin, Nathan Anderson, Richard H. Adams, Jeffery P. Demuth, and Heath Blackmon. 2023. EvobiR: Tools for comparative analyses and teaching evolutionary biology. 
EvobiR is a collection of functions that have proven convenient in our lab for a broad range of analyses:
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Comparative analysis of continuous traits influencing discrete states
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ABBA/BABA tests of introgression
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Tools for evaluating and measuring rate heterogeneity in Mk models
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Calculation of probabilities of sex chromosome to autosome fusions
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Counting topologies
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Working with sequence alignments
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Utility functions to ease comparative, phylogenetic, and quantitative genetic analyses
EvobiR can be installed using devtools to install from GitHub.
library(devtools)
install_github('coleoguy/evobir', build_vignettes=T)
library(evobiR)
if you have questions or problems please let me know coleoguy@gmail.com.