To be updated: Building an ATAC-seq count matrices from bam file

[kridsadakorn]

https://nbviewer.jupyter.org/github/colomemaria/epiScanpy/blob/master/docs/tutorials/ATAC_bld_ct_mtx_tutorial.html

To update in the tutorial

epi.ct.bld_atac_mtx(list_bam_files=list_cells,
                    loaded_feat=enhancers,
                    output_file='test_ATAC_mtx.txt',
                    path=path_to_play_data,
                    writing_option='w',
                    header=enhancer_names)

output_file was update to output_file_name