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Adds support for AEON.py (https://github.com/sybila/biodivine-aeon-py/). AEON provides several symbolic algorithms for analysis of asynchronous BNs, including attractor detection and reachability. Furthermore, BNs in AEON can contain uninterpreted functions, allowing analysis that incorporates partially unknown network dynamics.
Furthermore, I've added a dependency on
python-graphviz
to the docker file (python bindings for graphviz, which is already included). This makes it possible to convert.dot
files to images directly in the notebooks. We don't depend on it directly, but we can output.dot
in several places (we'll probably add more support for it later down the line), so having it included is quite useful.The image can be tested using
(I am running the validation locally right now, but everything seems to be working when tested in custom extension of the colomoto image).
Checklist
Dockerfile
tutorials/<tool>
foldervalidate.sh
hooks/release_changes.json