fixed param for reduce_dim_sce

combiz · Mar 24, 2023 · eddcddd · eddcddd
1 parent 67693d7
commit eddcddd
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/conf/scflow_analysis.config b/conf/scflow_analysis.config
@@ -73,7 +73,7 @@ params {
     // Options: Dimensionality Reduction
     reddim_input_reduced_dim         = 'PCA,Liger' // *
     reddim_reduction_methods         = 'tSNE,UMAP,UMAP3D' // *
-    reddim_vars_to_regress_out       = 'nCount_RNA,pc_mito' // *
+    reddim_vars_to_regress_out       = 'total_counts,pc_mito' // *
     // umap
     reddim_umap_pca_dims             = 30
     reddim_umap_n_neighbors          = 35