Skip to content

Issues: common-workflow-lab/galaxy

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

43 Open 67 Closed
43 Open 67 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Support outputs_to_working_directory
#146 opened Sep 5, 2023 by mvdbeek
UI for CWL workflow/tool execution
#145 opened Oct 7, 2022 by mr-c
2
default values of "class: File" or "class: Directory" need persisting
#144 opened Dec 10, 2021 by mr-c
@mvdbeek
1
Update Cwl interactor to target newer upload tool
#143 opened Dec 9, 2021 by mvdbeek
Diagnosis of failing tests
#142 opened Dec 8, 2021 by mvdbeek
6 of 20 tasks
TypeError: unhashable type: 'list'
#141 opened Nov 16, 2021 by mr-c
2
Better $(runtime) support
#135 opened Nov 15, 2020 by mr-c
1 task
CI: report with CWL conformance test badges
#134 opened Nov 15, 2020 by mr-c
Figuring out path forward on complicated output sources
#126 opened Nov 10, 2020 by jmchilton
8
Parse creator and license information from CWL documents. friendliness/intermediate
#117 opened Nov 9, 2020 by jmchilton
1
Re-visit library vs. Galaxy usage of UUIDs in tool loading.
#113 opened Jan 13, 2020 by jmchilton
Documentation on CWL-in-Galaxy
#103 opened Apr 29, 2019 by stain
1
Refactor the hacky EphemeralCollection (inputs that are produced by expressions) in cwlbranch into something that can be included into Galaxy core. friendliness/hard target/galaxy target/galaxycwlbranch
#101 opened Mar 23, 2019 by jmchilton
Implement workflow input expressions for core that CWL can leverage. friendliness/hard target/galaxy target/galaxycwlbranch
#100 opened Mar 23, 2019 by jmchilton
Polish and enhance FieldType handling to get it into core. friendliness/hard target/galaxy target/galaxycwlbranch
#99 opened Mar 23, 2019 by jmchilton
Refactor specifying an object_id for workflows into Galaxy core. friendliness/intermediate target/galaxy target/galaxycwlbranch
#96 opened Mar 22, 2019 by jmchilton
1
The tool 'tmpugCygk#infernal-cmsearch-v1.1.2.cwl' is missing. Cannot build workflow module
#94 opened Dec 27, 2018 by ghost
Map tar file to 'Directory' type
#93 opened Dec 27, 2018 by ghost
KeyError exception when saving a packed workflow
#92 opened Dec 27, 2018 by ghost
TypeError exception when importing a packed workflow
#91 opened Dec 27, 2018 by ghost
Using galactic_cwl tools.
#88 opened Jul 1, 2018 by jmchilton
Run the EBI transcripts annotation workflows
#87 opened Jun 30, 2018 by hmenager
Allow Conditional Tool Parameters friendliness/hard target/galaxycwlbranch target/spec
#82 opened Sep 28, 2017 by jmchilton
Enable CWL Workflows to Specify Tools by "ID". friendliness/hard target/spec
#81 opened Sep 28, 2017 by jmchilton
1
Build a UX for Secondary Files and Directory Types friendliness/hard target/galaxycwlbranch
#80 opened Sep 28, 2017 by jmchilton
ProTip! Follow long discussions with comments:>50.