Got .out files, can't see them

[GoogleCodeExporter]

What steps will reproduce the problem?
1. Load 30 spectra (.mgf)
2. Stablished different parameters (fixed modifications - carboxymethyl, 
variable modifications - oxidation M, phosphorylation Ser, Thr, Tyr) 
3. Results didn't show but .out files were generated

What is the expected output? What do you see instead?
Expected to see peptides for each ms.ms spectra. All 30 spectra run well but at 
the end all boxes were empty and a message appeared (An error occured. If the 
problem persists, please contact developers)

What version of the product are you using? On what operating system?
DeNovo Gui v1.3.7
Mac OS X 10.7.5

Please provide any additional information below.

Original issue reported on code.google.com by iapa...@gmail.com on 28 Apr 2014 at 2:33

Attachments:

• [Captura de pantalla 2014-04-28 a la(s) 9.25.25.png](https://storage.googleapis.com/google-code-attachments/denovogui/issue-8/comment-0/Captura de pantalla 2014-04-28 a la%28s%29 9.25.25.png)

[GoogleCodeExporter]

Thanks for telling us about this issue. 

Can you send us the DeNovoGUI log file? Just reopen DeNovoGUI and on the Help 
menu choose Bug Report. With this information we will hopefully be able to 
locate the problem.

Original comment by harald.b...@gmail.com on 28 Apr 2014 at 3:18

• Changed state: Started

[GoogleCodeExporter]

Hi, thanks for answer. Here are the files: 1. html about the process itself. 2. 
two of the log files.

Original comment by iapa...@gmail.com on 28 Apr 2014 at 3:45

Attachments:

• A1.mgf_directag.log
• [DeNovoGUI Report 2014-04-28 07.52.45.html](https://storage.googleapis.com/google-code-attachments/denovogui/issue-8/comment-2/DeNovoGUI Report 2014-04-28 07.52.45.html)
• denovoGUI.parameters
• A2.mgf_directag.log

[GoogleCodeExporter]

Here is the bug report.

Original comment by iapa...@gmail.com on 28 Apr 2014 at 3:50

Attachments:

• [Bug report.txt](https://storage.googleapis.com/google-code-attachments/denovogui/issue-8/comment-3/Bug report.txt)

[GoogleCodeExporter]

From your bug report I see the following message: "DirecTag_Windows.exe: cannot 
execute binary file", i.e., DeNovoGUI tries to run the Windows version of 
DirecTag, which of course fails given that you are running this on a Mac.

And now I see that we have only included the Windows version of DirecTag in 
DeNovoGUI. I see that there is a Linux version available, which should 
hopefully work on Mac as well. We'll try to add this and release a new version 
as soon as possible.

In the mean time you can run PepNovo by itself, as there we have included 
support for Windows, Linux and Mac.

Original comment by harald.b...@gmail.com on 28 Apr 2014 at 10:03

• Changed state: Accepted

[GoogleCodeExporter]

A quick update. I've been in touch with the DirecTag developers, and at the 
moment there is no official Mac version available for DirecTag. They are 
however now considering this and a Mac version will hopefully be available soon.

In the mean time I'll release DeNovoGUI v1.4.0 where DirecTag is simply 
disabled for Mac. That should remove the issue of the tool crashing even if 
PepNovo runs successfully. As this was the main issue reported I hope it is ok 
that I close this issue.

Please let us know if you come across other issues.

Original comment by harald.b...@gmail.com on 30 Apr 2014 at 9:00

• Changed state: Fixed

[GoogleCodeExporter]

Thank you for everything

Original comment by iapa...@gmail.com on 2 May 2014 at 8:32