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Fix bug in precompute for 3d data #649

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Jul 3, 2024
Merged

Fix bug in precompute for 3d data #649

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2 changes: 1 addition & 1 deletion micro_sam/precompute_state.py
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Original file line number Diff line number Diff line change
Expand Up @@ -68,7 +68,7 @@ def cache_amg_state(
if verbose:
print("Precomputing the state for instance segmentation.")

amg.initialize(raw, image_embeddings=image_embeddings, verbose=verbose, i=i)
amg.initialize(raw if i is None else raw[i], image_embeddings=image_embeddings, verbose=verbose, i=i)
amg_state = amg.get_state()

# put all state onto the cpu so that the state can be deserialized without a gpu
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