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Wrong python version required in the prometheus_client conda package for new version (0.18) #37

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olamarre opened this issue Nov 14, 2023 · 4 comments · Fixed by #38 or conda-forge/conda-forge-repodata-patches-feedstock#591
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@olamarre
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Solution to issue cannot be found in the documentation.

  • I checked the documentation.

Issue

The latest version of the prometheus_client conda package (0.18) gets installed in my python 3.7 environment as a dependency of jupyterlab. But as shown in the original github repository, python >= 3.8 is required for version 0.18.

I traced the issue to a wrong requirement in the conda package for version 0.18: it mistakenly requires python >= 3.6 (instead of >=3.8)

image

As a result, I cannot use my conda environment as is (errors are thrown when I launch jupyter lab). For now, the workaround is that I explicitly force my conda environment to use prometheus_client version 0.17.

Here's my conda environment yaml file:

name: test-env
channels:
    - conda-forge
    - nodefaults
dependencies:
    - python=3.7
    - jupyterlab

Installed packages

# packages in environment at /home/olamarre/miniconda3/envs/test-env:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                        main  
_openmp_mutex             5.1                       1_gnu  
anyio                     3.7.1              pyhd8ed1ab_0    conda-forge
argon2-cffi               23.1.0             pyhd8ed1ab_0    conda-forge
argon2-cffi-bindings      21.2.0           py37h540881e_2    conda-forge
attrs                     23.1.0             pyh71513ae_1    conda-forge
babel                     2.13.1             pyhd8ed1ab_0    conda-forge
backcall                  0.2.0              pyh9f0ad1d_0    conda-forge
backports                 1.0                pyhd8ed1ab_3    conda-forge
backports.functools_lru_cache 1.6.5              pyhd8ed1ab_0    conda-forge
beautifulsoup4            4.12.2             pyha770c72_0    conda-forge
bleach                    6.1.0              pyhd8ed1ab_0    conda-forge
brotli-python             1.0.9            py37hd23a5d3_7    conda-forge
ca-certificates           2023.08.22           h06a4308_0  
certifi                   2023.7.22          pyhd8ed1ab_0    conda-forge
cffi                      1.15.0           py37h036bc23_0    conda-forge
charset-normalizer        3.3.2              pyhd8ed1ab_0    conda-forge
debugpy                   1.6.0            py37hd23a5d3_0    conda-forge
decorator                 5.1.1              pyhd8ed1ab_0    conda-forge
defusedxml                0.7.1              pyhd8ed1ab_0    conda-forge
entrypoints               0.4                pyhd8ed1ab_0    conda-forge
exceptiongroup            1.1.3              pyhd8ed1ab_0    conda-forge
idna                      3.4                pyhd8ed1ab_0    conda-forge
importlib-metadata        4.11.4           py37h89c1867_0    conda-forge
importlib_resources       6.0.0              pyhd8ed1ab_0    conda-forge
ipykernel                 6.16.2             pyh210e3f2_0    conda-forge
ipython                   7.33.0           py37h89c1867_0    conda-forge
ipython_genutils          0.2.0                      py_1    conda-forge
jedi                      0.19.1             pyhd8ed1ab_0    conda-forge
jinja2                    3.1.2              pyhd8ed1ab_1    conda-forge
json5                     0.9.14             pyhd8ed1ab_0    conda-forge
jsonschema                4.17.3             pyhd8ed1ab_0    conda-forge
jupyter_client            7.3.4              pyhd8ed1ab_0    conda-forge
jupyter_core              4.11.1           py37h89c1867_0    conda-forge
jupyter_server            1.23.4             pyhd8ed1ab_0    conda-forge
jupyterlab                3.5.3              pyhd8ed1ab_0    conda-forge
jupyterlab_pygments       0.2.2              pyhd8ed1ab_0    conda-forge
jupyterlab_server         2.24.0             pyhd8ed1ab_0    conda-forge
ld_impl_linux-64          2.38                 h1181459_1  
libffi                    3.4.4                h6a678d5_0  
libgcc-ng                 11.2.0               h1234567_1  
libgomp                   11.2.0               h1234567_1  
libsodium                 1.0.18               h36c2ea0_1    conda-forge
libstdcxx-ng              11.2.0               h1234567_1  
markupsafe                2.1.1            py37h540881e_1    conda-forge
matplotlib-inline         0.1.6              pyhd8ed1ab_0    conda-forge
mistune                   3.0.2              pyhd8ed1ab_0    conda-forge
nbclassic                 1.0.0              pyhb4ecaf3_1    conda-forge
nbclient                  0.7.0              pyhd8ed1ab_0    conda-forge
nbconvert                 7.6.0              pyhd8ed1ab_0    conda-forge
nbconvert-core            7.6.0              pyhd8ed1ab_0    conda-forge
nbconvert-pandoc          7.6.0              pyhd8ed1ab_0    conda-forge
nbformat                  5.8.0              pyhd8ed1ab_0    conda-forge
ncurses                   6.4                  h6a678d5_0  
nest-asyncio              1.5.8              pyhd8ed1ab_0    conda-forge
notebook                  6.5.6              pyha770c72_0    conda-forge
notebook-shim             0.2.3              pyhd8ed1ab_0    conda-forge
openssl                   1.1.1w               h7f8727e_0  
packaging                 23.2               pyhd8ed1ab_0    conda-forge
pandoc                    2.19.2               ha770c72_0    conda-forge
pandocfilters             1.5.0              pyhd8ed1ab_0    conda-forge
parso                     0.8.3              pyhd8ed1ab_0    conda-forge
pexpect                   4.8.0              pyh1a96a4e_2    conda-forge
pickleshare               0.7.5                   py_1003    conda-forge
pip                       22.3.1           py37h06a4308_0  
pkgutil-resolve-name      1.3.10             pyhd8ed1ab_1    conda-forge
prometheus_client         0.18.0             pyhd8ed1ab_0    conda-forge
prompt-toolkit            3.0.40             pyha770c72_0    conda-forge
psutil                    5.9.1            py37h540881e_0    conda-forge
ptyprocess                0.7.0              pyhd3deb0d_0    conda-forge
pycparser                 2.21               pyhd8ed1ab_0    conda-forge
pygments                  2.16.1             pyhd8ed1ab_0    conda-forge
pyrsistent                0.18.1           py37h540881e_1    conda-forge
pysocks                   1.7.1            py37h89c1867_5    conda-forge
python                    3.7.16               h7a1cb2a_0  
python-dateutil           2.8.2              pyhd8ed1ab_0    conda-forge
python-fastjsonschema     2.18.1             pyhd8ed1ab_0    conda-forge
python_abi                3.7                     2_cp37m    conda-forge
pytz                      2023.3.post1       pyhd8ed1ab_0    conda-forge
pyzmq                     23.0.0           py37h0c0c2a8_0    conda-forge
readline                  8.2                  h5eee18b_0  
requests                  2.31.0             pyhd8ed1ab_0    conda-forge
send2trash                1.8.2              pyh41d4057_0    conda-forge
setuptools                65.6.3           py37h06a4308_0  
six                       1.16.0             pyh6c4a22f_0    conda-forge
sniffio                   1.3.0              pyhd8ed1ab_0    conda-forge
soupsieve                 2.3.2.post1        pyhd8ed1ab_0    conda-forge
sqlite                    3.41.2               h5eee18b_0  
terminado                 0.17.1             pyh41d4057_0    conda-forge
tinycss2                  1.2.1              pyhd8ed1ab_0    conda-forge
tk                        8.6.12               h1ccaba5_0  
tomli                     2.0.1              pyhd8ed1ab_0    conda-forge
tornado                   6.1              py37h540881e_3    conda-forge
traitlets                 5.9.0              pyhd8ed1ab_0    conda-forge
typing-extensions         4.7.1                hd8ed1ab_0    conda-forge
typing_extensions         4.7.1              pyha770c72_0    conda-forge
urllib3                   2.1.0              pyhd8ed1ab_0    conda-forge
wcwidth                   0.2.9              pyhd8ed1ab_0    conda-forge
webencodings              0.5.1              pyhd8ed1ab_2    conda-forge
websocket-client          1.6.1              pyhd8ed1ab_0    conda-forge
wheel                     0.38.4           py37h06a4308_0  
xz                        5.4.2                h5eee18b_0  
zeromq                    4.3.4                h9c3ff4c_1    conda-forge
zipp                      3.15.0             pyhd8ed1ab_0    conda-forge
zlib                      1.2.13               h5eee18b_0

Environment info

active environment : test-env
    active env location : /home/olamarre/miniconda3/envs/test-env
            shell level : 2
       user config file : /home/olamarre/.condarc
 populated config files : /home/olamarre/.condarc
          conda version : 23.3.1
    conda-build version : not installed
         python version : 3.10.11.final.0
       virtual packages : __archspec=1=x86_64
                          __glibc=2.31=0
                          __linux=5.15.0=0
                          __unix=0=0
       base environment : /home/olamarre/miniconda3  (writable)
      conda av data dir : /home/olamarre/miniconda3/etc/conda
  conda av metadata url : None
           channel URLs : https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /home/olamarre/miniconda3/pkgs
                          /home/olamarre/.conda/pkgs
       envs directories : /home/olamarre/miniconda3/envs
                          /home/olamarre/.conda/envs
               platform : linux-64
             user-agent : conda/23.3.1 requests/2.28.1 CPython/3.10.11 Linux/5.15.0-87-generic ubuntu/20.04.6 glibc/2.31 solver/libmamba conda-libmamba-solver/23.3.0 libmambapy/1.4.2
                UID:GID : 1000:1000
             netrc file : None
           offline mode : False
@ocefpaf
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ocefpaf commented Nov 14, 2023

@olamarre something is amiss with your configuration b/c even though you have nodefaults you are getting packages from it. (All those packages without a channel in your list.)

Regardless, we do have that problem. See

I'll send a PR here to fix it but we also need to send a repodatapatch for the old builds.

@olamarre
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Hi @ocefpaf - thanks a lot for the quick reply.

Indeed, there was something wrong with my conda configuration - it's fixed now (nodefaults works). But more importantly, the issue still persists. I just created a new environment again, and the version 0.18 of prometheus client still gets installed.

I see the new build in the conda package webpage, but the old build is still there and I think this is what still gets installed:

image

Here are the installed packages in the environment I just re-created (output of conda list):

# packages in environment at /home/olamarre/miniconda3/envs/test-env:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       2_gnu    conda-forge
aiofiles                  22.1.0             pyhd8ed1ab_0    conda-forge
aiosqlite                 0.19.0             pyhd8ed1ab_0    conda-forge
anyio                     3.7.1              pyhd8ed1ab_0    conda-forge
argon2-cffi               23.1.0             pyhd8ed1ab_0    conda-forge
argon2-cffi-bindings      21.2.0           py37h540881e_2    conda-forge
arrow                     1.2.3              pyhd8ed1ab_0    conda-forge
attrs                     23.1.0             pyh71513ae_1    conda-forge
babel                     2.13.1             pyhd8ed1ab_0    conda-forge
backcall                  0.2.0              pyh9f0ad1d_0    conda-forge
backports                 1.0                pyhd8ed1ab_3    conda-forge
backports.functools_lru_cache 1.6.5              pyhd8ed1ab_0    conda-forge
beautifulsoup4            4.12.2             pyha770c72_0    conda-forge
bleach                    6.1.0              pyhd8ed1ab_0    conda-forge
brotli-python             1.0.9            py37hd23a5d3_7    conda-forge
ca-certificates           2023.7.22            hbcca054_0    conda-forge
cached-property           1.5.2                hd8ed1ab_1    conda-forge
cached_property           1.5.2              pyha770c72_1    conda-forge
certifi                   2023.7.22          pyhd8ed1ab_0    conda-forge
cffi                      1.15.1           py37h43b0acd_1    conda-forge
charset-normalizer        3.3.2              pyhd8ed1ab_0    conda-forge
debugpy                   1.6.3            py37hd23a5d3_0    conda-forge
decorator                 5.1.1              pyhd8ed1ab_0    conda-forge
defusedxml                0.7.1              pyhd8ed1ab_0    conda-forge
entrypoints               0.4                pyhd8ed1ab_0    conda-forge
exceptiongroup            1.1.3              pyhd8ed1ab_0    conda-forge
fqdn                      1.5.1              pyhd8ed1ab_0    conda-forge
gmp                       6.3.0                h59595ed_0    conda-forge
idna                      3.4                pyhd8ed1ab_0    conda-forge
importlib-metadata        4.11.4           py37h89c1867_0    conda-forge
importlib_metadata        4.11.4               hd8ed1ab_0    conda-forge
importlib_resources       6.0.0              pyhd8ed1ab_0    conda-forge
ipykernel                 6.16.2             pyh210e3f2_0    conda-forge
ipython                   7.33.0           py37h89c1867_0    conda-forge
ipython_genutils          0.2.0                      py_1    conda-forge
isoduration               20.11.0            pyhd8ed1ab_0    conda-forge
jedi                      0.19.1             pyhd8ed1ab_0    conda-forge
jinja2                    3.1.2              pyhd8ed1ab_1    conda-forge
json5                     0.9.14             pyhd8ed1ab_0    conda-forge
jsonpointer               2.0                        py_0    conda-forge
jsonschema                4.17.3             pyhd8ed1ab_0    conda-forge
jsonschema-with-format-nongpl 4.17.3             pyhd8ed1ab_0    conda-forge
jupyter_client            7.4.9              pyhd8ed1ab_0    conda-forge
jupyter_core              4.11.1           py37h89c1867_0    conda-forge
jupyter_events            0.6.3              pyhd8ed1ab_1    conda-forge
jupyter_server            1.23.4             pyhd8ed1ab_0    conda-forge
jupyter_server_fileid     0.9.0              pyhd8ed1ab_0    conda-forge
jupyter_server_ydoc       0.8.0              pyhd8ed1ab_0    conda-forge
jupyter_ydoc              0.2.4              pyhd8ed1ab_0    conda-forge
jupyterlab                3.6.6              pyhd8ed1ab_0    conda-forge
jupyterlab_pygments       0.2.2              pyhd8ed1ab_0    conda-forge
jupyterlab_server         2.24.0             pyhd8ed1ab_0    conda-forge
ld_impl_linux-64          2.40                 h41732ed_0    conda-forge
libffi                    3.4.2                h7f98852_5    conda-forge
libgcc-ng                 13.2.0               h807b86a_3    conda-forge
libgomp                   13.2.0               h807b86a_3    conda-forge
libnsl                    2.0.1                hd590300_0    conda-forge
libsodium                 1.0.18               h36c2ea0_1    conda-forge
libsqlite                 3.44.0               h2797004_0    conda-forge
libstdcxx-ng              13.2.0               h7e041cc_3    conda-forge
libzlib                   1.2.13               hd590300_5    conda-forge
markupsafe                2.1.1            py37h540881e_1    conda-forge
matplotlib-inline         0.1.6              pyhd8ed1ab_0    conda-forge
mistune                   3.0.2              pyhd8ed1ab_0    conda-forge
nbclassic                 1.0.0              pyhb4ecaf3_1    conda-forge
nbclient                  0.7.0              pyhd8ed1ab_0    conda-forge
nbconvert                 7.6.0              pyhd8ed1ab_0    conda-forge
nbconvert-core            7.6.0              pyhd8ed1ab_0    conda-forge
nbconvert-pandoc          7.6.0              pyhd8ed1ab_0    conda-forge
nbformat                  5.8.0              pyhd8ed1ab_0    conda-forge
ncurses                   6.4                  h59595ed_2    conda-forge
nest-asyncio              1.5.8              pyhd8ed1ab_0    conda-forge
notebook                  6.5.6              pyha770c72_0    conda-forge
notebook-shim             0.2.3              pyhd8ed1ab_0    conda-forge
openssl                   3.1.4                hd590300_0    conda-forge
packaging                 23.2               pyhd8ed1ab_0    conda-forge
pandoc                    3.1.3                h32600fe_0    conda-forge
pandocfilters             1.5.0              pyhd8ed1ab_0    conda-forge
parso                     0.8.3              pyhd8ed1ab_0    conda-forge
pexpect                   4.8.0              pyh1a96a4e_2    conda-forge
pickleshare               0.7.5                   py_1003    conda-forge
pip                       23.3.1             pyhd8ed1ab_0    conda-forge
pkgutil-resolve-name      1.3.10             pyhd8ed1ab_1    conda-forge
prometheus_client         0.18.0             pyhd8ed1ab_0    conda-forge
prompt-toolkit            3.0.41             pyha770c72_0    conda-forge
psutil                    5.9.3            py37h540881e_0    conda-forge
ptyprocess                0.7.0              pyhd3deb0d_0    conda-forge
pycparser                 2.21               pyhd8ed1ab_0    conda-forge
pygments                  2.16.1             pyhd8ed1ab_0    conda-forge
pyrsistent                0.18.1           py37h540881e_1    conda-forge
pysocks                   1.7.1            py37h89c1867_5    conda-forge
python                    3.7.12          hf930737_100_cpython    conda-forge
python-dateutil           2.8.2              pyhd8ed1ab_0    conda-forge
python-fastjsonschema     2.18.1             pyhd8ed1ab_0    conda-forge
python-json-logger        2.0.7              pyhd8ed1ab_0    conda-forge
python_abi                3.7                     4_cp37m    conda-forge
pytz                      2023.3.post1       pyhd8ed1ab_0    conda-forge
pyyaml                    6.0              py37h540881e_4    conda-forge
pyzmq                     24.0.1           py37h0c0c2a8_0    conda-forge
readline                  8.2                  h8228510_1    conda-forge
requests                  2.31.0             pyhd8ed1ab_0    conda-forge
rfc3339-validator         0.1.4              pyhd8ed1ab_0    conda-forge
rfc3986-validator         0.1.1              pyh9f0ad1d_0    conda-forge
send2trash                1.8.2              pyh41d4057_0    conda-forge
setuptools                68.2.2             pyhd8ed1ab_0    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
sniffio                   1.3.0              pyhd8ed1ab_0    conda-forge
soupsieve                 2.3.2.post1        pyhd8ed1ab_0    conda-forge
sqlite                    3.44.0               h2c6b66d_0    conda-forge
terminado                 0.17.1             pyh41d4057_0    conda-forge
tinycss2                  1.2.1              pyhd8ed1ab_0    conda-forge
tk                        8.6.13          noxft_h4845f30_101    conda-forge
tomli                     2.0.1              pyhd8ed1ab_0    conda-forge
tornado                   6.2              py37h540881e_0    conda-forge
traitlets                 5.9.0              pyhd8ed1ab_0    conda-forge
typing-extensions         4.7.1                hd8ed1ab_0    conda-forge
typing_extensions         4.7.1              pyha770c72_0    conda-forge
uri-template              1.3.0              pyhd8ed1ab_0    conda-forge
urllib3                   2.1.0              pyhd8ed1ab_0    conda-forge
wcwidth                   0.2.10             pyhd8ed1ab_0    conda-forge
webcolors                 1.13               pyhd8ed1ab_0    conda-forge
webencodings              0.5.1              pyhd8ed1ab_2    conda-forge
websocket-client          1.6.1              pyhd8ed1ab_0    conda-forge
wheel                     0.41.3             pyhd8ed1ab_0    conda-forge
xz                        5.2.6                h166bdaf_0    conda-forge
y-py                      0.5.4            py37hbd0741f_0    conda-forge
yaml                      0.2.5                h7f98852_2    conda-forge
ypy-websocket             0.8.2              pyhd8ed1ab_0    conda-forge
zeromq                    4.3.5                h59595ed_0    conda-forge
zipp                      3.15.0             pyhd8ed1ab_0    conda-forge
zlib                      1.2.13               hd590300_5    conda-forge

@ocefpaf
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ocefpaf commented Nov 14, 2023

The current build will be fixed when conda-forge/conda-forge-repodata-patches-feedstock#591 is merged.

@ocefpaf ocefpaf reopened this Nov 14, 2023
@olamarre
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Oh I see, thanks!

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