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dependency on numpy >= 1.21 #66

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itcarroll opened this issue Feb 13, 2023 · 4 comments
Closed
1 task done

dependency on numpy >= 1.21 #66

itcarroll opened this issue Feb 13, 2023 · 4 comments
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bug Something isn't working

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@itcarroll
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Solution to issue cannot be found in the documentation.

  • I checked the documentation.

Issue

Installing rioxarray from conda-forge does not force the installed numpy version to update to a version that includes numpy.typing.NDArray. Importing rioxarray in this case gives the following error.

ImportError: cannot import name 'NDArray' from 'numpy.typing' (/home/itcarroll/miniconda3/envs/riox/lib/python3.9/site-packages/numpy/typing/__init__.py)

Numpy docs indicate numpy.typing.NDArray was introduced in 1.21.

Installed packages

# packages in environment at /home/itcarroll/miniconda3/envs/riox:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                  2_kmp_llvm    conda-forge
affine                    2.4.0              pyhd8ed1ab_0    conda-forge
appdirs                   1.4.4              pyh9f0ad1d_0    conda-forge
attrs                     22.2.0             pyh71513ae_0    conda-forge
blosc                     1.21.3               hafa529b_0    conda-forge
boost-cpp                 1.78.0               h75c5d50_1    conda-forge
brotlipy                  0.7.0           py39hb9d737c_1005    conda-forge
bzip2                     1.0.8                h7f98852_4    conda-forge
c-ares                    1.18.1               h7f98852_0    conda-forge
ca-certificates           2022.12.7            ha878542_0    conda-forge
cairo                     1.16.0            ha61ee94_1014    conda-forge
certifi                   2022.12.7          pyhd8ed1ab_0    conda-forge
cffi                      1.15.1           py39he91dace_3    conda-forge
cfitsio                   4.2.0                hd9d235c_0    conda-forge
charset-normalizer        2.1.1              pyhd8ed1ab_0    conda-forge
click                     8.1.3           unix_pyhd8ed1ab_2    conda-forge
click-plugins             1.1.1                      py_0    conda-forge
cligj                     0.7.2              pyhd8ed1ab_1    conda-forge
cryptography              39.0.1           py39h079d5ae_0    conda-forge
curl                      7.87.0               hdc1c0ab_0    conda-forge
expat                     2.5.0                h27087fc_0    conda-forge
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 hab24e00_0    conda-forge
fontconfig                2.14.2               h14ed4e7_0    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
freetype                  2.12.1               hca18f0e_1    conda-forge
freexl                    1.0.6                h166bdaf_1    conda-forge
geos                      3.11.1               h27087fc_0    conda-forge
geotiff                   1.7.1                h7157cca_5    conda-forge
gettext                   0.21.1               h27087fc_0    conda-forge
giflib                    5.2.1                h36c2ea0_2    conda-forge
hdf4                      4.2.15               h9772cbc_5    conda-forge
hdf5                      1.12.2          nompi_h4df4325_101    conda-forge
icu                       70.1                 h27087fc_0    conda-forge
idna                      3.4                pyhd8ed1ab_0    conda-forge
jpeg                      9e                   h0b41bf4_3    conda-forge
json-c                    0.16                 hc379101_0    conda-forge
kealib                    1.5.0                ha7026e8_0    conda-forge
keyutils                  1.6.1                h166bdaf_0    conda-forge
krb5                      1.20.1               h81ceb04_0    conda-forge
lcms2                     2.14                 hfd0df8a_1    conda-forge
ld_impl_linux-64          2.38                 h1181459_1  
lerc                      4.0.0                h27087fc_0    conda-forge
libaec                    1.0.6                hcb278e6_1    conda-forge
libblas                   3.9.0           15_linux64_openblas    conda-forge
libcblas                  3.9.0           15_linux64_openblas    conda-forge
libcurl                   7.87.0               hdc1c0ab_0    conda-forge
libdeflate                1.17                 h0b41bf4_0    conda-forge
libedit                   3.1.20191231         he28a2e2_2    conda-forge
libev                     4.33                 h516909a_1    conda-forge
libffi                    3.4.2                h6a678d5_6  
libgcc-ng                 12.2.0              h65d4601_19    conda-forge
libgdal                   3.6.2                h10cbb15_3    conda-forge
libgfortran-ng            12.2.0              h69a702a_19    conda-forge
libgfortran5              12.2.0              h337968e_19    conda-forge
libglib                   2.74.1               h606061b_1    conda-forge
libiconv                  1.17                 h166bdaf_0    conda-forge
libkml                    1.3.0             h37653c0_1015    conda-forge
liblapack                 3.9.0           15_linux64_openblas    conda-forge
libnetcdf                 4.8.1           nompi_h261ec11_106    conda-forge
libnghttp2                1.51.0               hff17c54_0    conda-forge
libnsl                    2.0.0                h7f98852_0    conda-forge
libopenblas               0.3.20          pthreads_h78a6416_0    conda-forge
libpng                    1.6.39               h753d276_0    conda-forge
libpq                     15.2                 hb675445_0    conda-forge
librttopo                 1.1.0               ha49c73b_12    conda-forge
libspatialite             5.0.1               h7c8129e_22    conda-forge
libsqlite                 3.40.0               h753d276_0    conda-forge
libssh2                   1.10.0               hf14f497_3    conda-forge
libstdcxx-ng              12.2.0              h46fd767_19    conda-forge
libtiff                   4.5.0                h6adf6a1_2    conda-forge
libuuid                   2.32.1            h7f98852_1000    conda-forge
libwebp-base              1.2.4                h166bdaf_0    conda-forge
libxcb                    1.13              h7f98852_1004    conda-forge
libxml2                   2.10.3               h7463322_0    conda-forge
libzip                    1.9.2                hc929e4a_1    conda-forge
libzlib                   1.2.13               h166bdaf_4    conda-forge
llvm-openmp               15.0.7               h0cdce71_0    conda-forge
lz4-c                     1.9.4                hcb278e6_0    conda-forge
ncurses                   6.4                  h6a678d5_0  
nspr                      4.35                 h27087fc_0    conda-forge
nss                       3.88                 he45b914_0    conda-forge
numpy                     1.20.3           py39hd249d9e_2    conda-forge
openjpeg                  2.5.0                hfec8fc6_2    conda-forge
openssl                   3.0.8                h0b41bf4_0    conda-forge
packaging                 23.0               pyhd8ed1ab_0    conda-forge
pandas                    1.5.3            py39h2ad29b5_0    conda-forge
pcre2                     10.40                hc3806b6_0    conda-forge
pip                       22.3.1           py39h06a4308_0  
pixman                    0.40.0               h36c2ea0_0    conda-forge
pooch                     1.6.0              pyhd8ed1ab_0    conda-forge
poppler                   22.12.0              h091648b_1    conda-forge
poppler-data              0.4.12               hd8ed1ab_0    conda-forge
postgresql                15.2                 h3248436_0    conda-forge
proj                      9.1.0                h8ffa02c_1    conda-forge
pthread-stubs             0.4               h36c2ea0_1001    conda-forge
pycparser                 2.21               pyhd8ed1ab_0    conda-forge
pyopenssl                 23.0.0             pyhd8ed1ab_0    conda-forge
pyparsing                 3.0.9              pyhd8ed1ab_0    conda-forge
pyproj                    3.4.1            py39h12578bd_0    conda-forge
pysocks                   1.7.1              pyha2e5f31_6    conda-forge
python                    3.9.16          h2782a2a_0_cpython    conda-forge
python-dateutil           2.8.2              pyhd8ed1ab_0    conda-forge
python_abi                3.9                      2_cp39    conda-forge
pytz                      2022.7.1           pyhd8ed1ab_0    conda-forge
rasterio                  1.3.4            py39h214cc9d_0    conda-forge
readline                  8.2                  h5eee18b_0  
requests                  2.28.2             pyhd8ed1ab_0    conda-forge
rioxarray                 0.13.3             pyhd8ed1ab_0    conda-forge
scipy                     1.10.0           py39h7360e5f_2    conda-forge
setuptools                65.6.3           py39h06a4308_0  
six                       1.16.0             pyh6c4a22f_0    conda-forge
snappy                    1.1.9                hbd366e4_2    conda-forge
snuggs                    1.4.7                      py_0    conda-forge
sqlite                    3.40.1               h5082296_0  
tiledb                    2.13.2               hd532e3d_0    conda-forge
tk                        8.6.12               h1ccaba5_0  
tzcode                    2022g                h166bdaf_0    conda-forge
tzdata                    2022g                h04d1e81_0  
urllib3                   1.26.14            pyhd8ed1ab_0    conda-forge
wheel                     0.37.1             pyhd3eb1b0_0  
xarray                    2022.11.0          pyhd8ed1ab_0    conda-forge
xerces-c                  3.2.4                h55805fa_1    conda-forge
xorg-kbproto              1.0.7             h7f98852_1002    conda-forge
xorg-libice               1.0.10               h7f98852_0    conda-forge
xorg-libsm                1.2.3             hd9c2040_1000    conda-forge
xorg-libx11               1.7.2                h7f98852_0    conda-forge
xorg-libxau               1.0.9                h7f98852_0    conda-forge
xorg-libxdmcp             1.1.3                h7f98852_0    conda-forge
xorg-libxext              1.3.4                h7f98852_1    conda-forge
xorg-libxrender           0.9.10            h7f98852_1003    conda-forge
xorg-renderproto          0.11.1            h7f98852_1002    conda-forge
xorg-xextproto            7.3.0             h7f98852_1002    conda-forge
xorg-xproto               7.0.31            h7f98852_1007    conda-forge
xz                        5.2.10               h5eee18b_1  
zlib                      1.2.13               h166bdaf_4    conda-forge
zstd                      1.5.2                h3eb15da_6    conda-forge

Environment info

active environment : riox
    active env location : /home/itcarroll/miniconda3/envs/riox
            shell level : 2
       user config file : /home/itcarroll/.condarc
 populated config files : 
          conda version : 22.9.0
    conda-build version : not installed
         python version : 3.9.13.final.0
       virtual packages : __linux=5.15.0=0
                          __glibc=2.31=0
                          __unix=0=0
                          __archspec=1=x86_64
       base environment : /home/itcarroll/miniconda3  (writable)
      conda av data dir : /home/itcarroll/miniconda3/etc/conda
  conda av metadata url : None
           channel URLs : https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /home/itcarroll/miniconda3/pkgs
                          /home/itcarroll/.conda/pkgs
       envs directories : /home/itcarroll/miniconda3/envs
                          /home/itcarroll/.conda/envs
               platform : linux-64
             user-agent : conda/22.9.0 requests/2.28.1 CPython/3.9.13 Linux/5.15.0-52-generic ubuntu/20.04.5 glibc/2.31
                UID:GID : 398399194:398399194
             netrc file : /home/itcarroll/.netrc
           offline mode : False
@itcarroll itcarroll added the bug Something isn't working label Feb 13, 2023
@snowman2
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Related: corteva/rioxarray#587

@snowman2
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A PR is welcome adding a numpy pin here: https://github.com/conda-forge/rioxarray-feedstock/blob/main/recipe/meta.yaml

@snowman2
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More specifically here:

rioxarray-feedstock/recipe/meta.yaml

Lines 21 to 27 in a9a261c

run:
- python >=3.8
- rasterio >=1.1.1
- scipy
- xarray >=0.17
- pyproj >=2.2
- packaging

@itcarroll
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Fixed by #67

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@itcarroll @snowman2