add tmap and ogdf

recipes/ogdf/bld.bat

@@ -0,0 +1,12 @@
+md build
+cd build
+
+msbuild -version
+
+set MAKEFLAGS=
+
+cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=%PREFIX%
+if errorlevel 1 exit /b 1
+
+cmake --build . --config Release --target install
+if errorlevel 1 exit /b 1

recipes/ogdf/build.sh

@@ -0,0 +1,13 @@
+#!/bin/sh
+
+mkdir build
+cd build
+
+if [ "$(uname)" == "Darwin" ]; then
+    cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=${PREFIX} -DCMAKE_OSX_SYSROOT=${CONDA_BUILD_SYSROOT}
+else
+    cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=${PREFIX}
+fi
+
+make -j4
+make install

recipes/ogdf/meta.yaml

@@ -0,0 +1,44 @@
+{% set name = "ogdf" %}
+{% set version = "2020.02" %}
+
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/ogdf/ogdf/archive/catalpa-202002.tar.gz
+  sha256: 32f3f943675e55d1a23e62293d016dc1644b1176271d60f41788ade60c2d3fc5
+
+build:
+  number: 0
+  skip: True  # [win]
+  run_exports:
+    - {{ pin_subpackage('ogdf', max_pin='2020.02') }}
+
+requirements:
+  build:
+    - {{ compiler('cxx') }}
+    - cmake >=3.1
+    - make  # [not win]
+    - ninja  # [win]
+
+test:
+  commands:
+    - test -f $PREFIX/lib/libOGDF$SHLIB_EXT  # [unix]
+    - if not exist %LIBRARY_LIB%\\libOGDF.lib exit 1  # [win]
+
+about:
+  home: http://www.ogdf.net/
+  license: GPL-3.0-only
+  license_file: LICENSE.txt
+  summary: OGDF is a self-contained C++ class library for the automatic layout of diagrams
+
+  description: |
+    OGDF is a self-contained C++ class library for the automatic layout of diagrams.
+  doc_url: http://www.ogdf.net/doku.php
+  dev_url: https://github.com/ogdf/ogdf
+
+extra:
+  recipe-maintainers:
+    - hadim

recipes/tmap/01_bind2d_deprecated.diff

@@ -0,0 +1,22 @@
+diff --git a/tmap/tmap/analyse.cc b/tmap/tmap/analyse.cc
+index b282b74..1d6e686 100644
+--- a/tmap/tmap/analyse.cc
++++ b/tmap/tmap/analyse.cc
+@@ -30,7 +30,7 @@ namespace {
+
+     std::vector<float> diff(weights.size());
+     std::transform(weights.begin(), weights.end(), diff.begin(),
+-                  std::bind2nd(std::minus<float>(), mean));
++                  std::bind(std::minus<float>(), std::placeholders::_1, mean));
+     float sq_sum = std::inner_product(diff.begin(), diff.end(), diff.begin(), 0.0);
+     float stdev = std::sqrt(sq_sum / weights.size());
+
+@@ -64,7 +64,7 @@ namespace {
+
+       std::vector<float> diff(weights.size());
+       std::transform(weights.begin(), weights.end(), diff.begin(),
+-                    std::bind2nd(std::minus<float>(), mean));
++                    std::bind(std::minus<float>(), std::placeholders::_1, mean));
+       float sq_sum = std::inner_product(diff.begin(), diff.end(), diff.begin(), 0.0);
+       float stdev = std::sqrt(sq_sum / weights.size());
+

recipes/tmap/02_setup_windows.diff

@@ -0,0 +1,13 @@
+diff --git a/tmap/setup.py b/tmap/setup.py
+index 28c0d06..4d7e240 100644
+--- a/tmap/setup.py
++++ b/tmap/setup.py
+@@ -54,8 +54,6 @@ class CMakeBuild(build_ext):
+             cmake_args += [
+                 "-DCMAKE_LIBRARY_OUTPUT_DIRECTORY_{}={}".format(cfg.upper(), extdir)
+             ]
+-            if sys.maxsize > 2 ** 32:
+-                cmake_args += ["-A", "x64"]
+             build_args += ["--", "/m"]
+         elif platform.system() == 'Darwin':
+             cmake_args += ['-DOpenMP_C_FLAG=-fopenmp']

recipes/tmap/LICENSE.txt

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2020 Reymond Research Group, University of Bern and AstraZeneca
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

recipes/tmap/bld.bat

@@ -0,0 +1,3 @@
+cd tmap
+"%PYTHON%" setup.py install --prefix=%PREFIX%
+if errorlevel 1 exit 1

recipes/tmap/build.sh

@@ -0,0 +1,4 @@
+#!/bin/sh
+
+cd tmap/
+$PYTHON setup.py install

recipes/tmap/meta.yaml

@@ -0,0 +1,62 @@
+{% set name = "tmap" %}
+{% set version = "1.0.0" %}
+
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/reymond-group/tmap/archive/9aa043dd1af022161048ee0a4b5554ec5e34977f.zip
+  sha256: 56cf4f83d663950ab7ef41deb425b8e1c01de378fb5239aeef7b6613a6edf212
+
+  patches:
+    - 01_bind2d_deprecated.diff
+    - 02_setup_windows.diff
+
+build:
+  number: 0
+  skip: True  # [win]
+  binary_relocation: False  # [osx]
+
+requirements:
+  build:
+    - {{ compiler('cxx') }}
+    - python {{ python }}
+    - cmake >=3.1
+    - make  # [not win]
+    - ninja  # [win]
+    - llvm-openmp  # [osx]
+    - libgomp  # [linux]
+    - openmp  # [win]
+    - setuptools
+    - pybind11
+    - ogdf ==2020.02
+  host:
+    - vc  # [win]
+    - llvm-openmp  # [osx]
+    - libgomp  # [linux]
+    - openmp  # [win]
+    - python
+    - pip
+  run:
+    - vc  # [win]
+    - llvm-openmp  # [osx]
+    - libgomp  # [linux]
+    - openmp  # [win]
+    - python
+    - ogdf
+
+test:
+  imports:
+    - tmap
+
+about:
+  home: https://github.com/reymond-group/tmap
+  license: MIT
+  license_file: LICENSE.txt
+  summary: 'A Python package for visualizing large, high-dimensional data sets.'
+
+extra:
+  recipe-maintainers:
+    - hadim