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tar.gz cellranger folders #161

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rbutleriii opened this issue Jun 20, 2024 · 0 comments
Open

tar.gz cellranger folders #161

rbutleriii opened this issue Jun 20, 2024 · 0 comments

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@rbutleriii
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I have my output cellranger data and in the outs folder, the raw_feature_bc_matrix, filtered_feature_bc_matrix, and analysis folders are all compressed archives *.tar.gz. Do I need to extract all three of those folders for the load10x function to import correctly? It looks like the feature matrices need to be or I get an error similar to #45

Loading raw count data
Error in full.data[[1]] : subscript out of bounds
Calls: lapply -> FUN -> load10X -> do.call -> <Anonymous>
Execution halted

Specifically, from the tutorial it looks like the clustering metadata is drawn from analysis, so can that be read as analysis.tar.gz?

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