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add args to adjust tqdm output #108

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merged 1 commit into from
Feb 22, 2023
Merged

add args to adjust tqdm output #108

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6 changes: 5 additions & 1 deletion torch_em/util/prediction.py
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Original file line number Diff line number Diff line change
Expand Up @@ -108,6 +108,8 @@ def predict_with_halo(
postprocess=None,
with_channels=False,
skip_block=None,
disable_tqdm=False,
tqdm_desc='predict with halo'
):
""" Run block-wise network prediction with halo.

Expand All @@ -125,6 +127,8 @@ def predict_with_halo(
postprocess [callable] - function to postprocess the network predictions (default: None)
with_channels [bool] - whether the input has a channel axis (default: False)
skip_block [callable] - function to evaluate wheter a given input block should be skipped (default: None)
disable_tqdm [bool] - flag that allows to disable tqdm output (e.g. if function is called multiple times)
tqdm_desc [str] - description shown by the tqdm output
"""
devices = [torch.device(gpu) for gpu in gpu_ids]
models = [
Expand Down Expand Up @@ -191,6 +195,6 @@ def predict_block(block_id):

n_blocks = blocking.numberOfBlocks
with futures.ThreadPoolExecutor(n_workers) as tp:
list(tqdm(tp.map(predict_block, range(n_blocks)), total=n_blocks))
list(tqdm(tp.map(predict_block, range(n_blocks)), total=n_blocks, disable=disable_tqdm, desc=tqdm_desc))

return output