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Raise warning for Lizard data download #163

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Oct 27, 2023
Merged

Raise warning for Lizard data download #163

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8 changes: 8 additions & 0 deletions torch_em/data/datasets/lizard.py
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Original file line number Diff line number Diff line change
@@ -1,4 +1,5 @@
import os
import warnings
from glob import glob
from shutil import rmtree

Expand All @@ -10,6 +11,10 @@
from tqdm import tqdm
from .import util

# TODO: the links don't work anymore (?)
# workaround to still make this work (kaggle still has the dataset in the same structure):
# - download the zip files manually from here - https://www.kaggle.com/datasets/aadimator/lizard-dataset
# - Kaggle API (TODO) - `kaggle datasets download -d aadimator/lizard-dataset`
URL1 = "https://warwick.ac.uk/fac/cross_fac/tia/data/lizard/lizard_images1.zip"
URL2 = "https://warwick.ac.uk/fac/cross_fac/tia/data/lizard/lizard_images2.zip"
LABEL_URL = "https://warwick.ac.uk/fac/cross_fac/tia/data/lizard/lizard_labels.zip"
Expand Down Expand Up @@ -85,6 +90,9 @@ def get_lizard_dataset(path, patch_shape, download=False, **kwargs):
This dataset is from the publication https://doi.org/10.48550/arXiv.2108.11195.
Please cite it if you use this dataset for a publication.
"""
if download:
warnings.warn(f"The download link does not work right now. Please manually download the zip files to {path} from https://www.kaggle.com/datasets/aadimator/lizard-dataset")

_require_lizard_data(path, download)

data_paths = glob(os.path.join(path, "*.h5"))
Expand Down