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Bring main up-to-date #173

Merged
merged 10 commits into from
Dec 4, 2023
Merged

Bring main up-to-date #173

merged 10 commits into from
Dec 4, 2023

Commits on Nov 2, 2023

  1. Add training script for livecell with affinities

    @anwai98
    anwai98 committed Nov 2, 2023
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  2. Update metric in training

    @anwai98
    anwai98 committed Nov 2, 2023
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Commits on Nov 3, 2023

  1. Refactor inference for livecell unetr

    @anwai98
    anwai98 committed Nov 3, 2023
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Commits on Nov 4, 2023

  1. Update mutex watershed segmentation functionality

    @anwai98
    anwai98 committed Nov 4, 2023
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  2. Update inference with affinities for unetr

    @anwai98
    anwai98 committed Nov 4, 2023
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Commits on Nov 6, 2023

  1. Update MWS Evaluation

    @anwai98
    anwai98 committed Nov 6, 2023
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  2. Update min_size for watershed

    @anwai98
    anwai98 committed Nov 6, 2023
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Commits on Nov 7, 2023

  1. Refactor UNETR Training (#4) 

    Refactoring the unetr training and inference scripts to adapt to training for all cell-types
    @anwai98
    anwai98 committed Nov 7, 2023
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  2. Update watershed min_size defaults for size filtering

    @anwai98
    anwai98 committed Nov 7, 2023
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Commits on Nov 8, 2023

  1. Merge pull request #166 from anwai98/dev 

    UNETR Training with Affinities
    @constantinpape
    constantinpape committed Nov 8, 2023
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