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WIP - Instance Segmentation Experiments #187

Merged
merged 10 commits into from
Dec 20, 2023
Merged

WIP - Instance Segmentation Experiments #187

merged 10 commits into from
Dec 20, 2023

Commits on Dec 12, 2023

  1. Add instance segmentation training

    @anwai98
    anwai98 committed Dec 12, 2023
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  2. Fix sam finetuned model ini

    @anwai98
    anwai98 committed Dec 12, 2023
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Commits on Dec 13, 2023

  1. Add freezing encoder in UNETR

    @anwai98
    anwai98 committed Dec 13, 2023
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  2. Update inference

    @anwai98
    anwai98 committed Dec 13, 2023
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Commits on Dec 14, 2023

  1. Restore unetr

    @anwai98
    anwai98 committed Dec 14, 2023
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  2. Restore unetr2

    @anwai98
    anwai98 committed Dec 14, 2023
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  3. Update freezing unetr

    @anwai98
    anwai98 committed Dec 14, 2023
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Commits on Dec 16, 2023

  1. UNETR - Make skip connections optional (#9) 

    Update UNETR model to optionally use skip connections or not
    @anwai98
    anwai98 committed Dec 16, 2023
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Commits on Dec 20, 2023

  1. Add encoder flexibility in UNETR (#10) 

    * Update distance transform (#11 - Getting instance segmentations from the distance transform)

* Making the encoder argument flexible (to either pytorch modules or model name as str)
    @anwai98
    anwai98 committed Dec 20, 2023
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  2. Fix checkpoint path argument

    @anwai98
    anwai98 committed Dec 20, 2023
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