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Dev #188

Merged
merged 12 commits into from
Dec 22, 2023
Merged

Dev #188

merged 12 commits into from
Dec 22, 2023

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constantinpape
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constantinpape and others added 12 commits December 11, 2023 15:34
@constantinpape
Merge pull request #184 from constantinpape/main
ef17600 
Sync dev
@anwai98
Add instance segmentation training
35332a2
@anwai98
Fix sam finetuned model ini
1821207
@anwai98
Add freezing encoder in UNETR
56253c2
@anwai98
Update inference
16612e4
@anwai98
Restore unetr
c6bc2db
@anwai98
Restore unetr2
8779e79
@anwai98
Update freezing unetr
741366f
@anwai98
UNETR - Make skip connections optional (#9)
41bab4a 
Update UNETR model to optionally use skip connections or not
@anwai98
Add encoder flexibility in UNETR (#10)
7f06c97 
* Update distance transform (#11 - Getting instance segmentations from the distance transform)

* Making the encoder argument flexible (to either pytorch modules or model name as str)
@anwai98
Fix checkpoint path argument
8c6648f
@constantinpape
Merge pull request #187 from anwai98/sam_is
1409c56 
WIP - Instance Segmentation Experiments
@constantinpape constantinpape merged commit 020f3fb into main Dec 22, 2023
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@constantinpape @anwai98