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Update UNETR upsampling #211

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merged 4 commits into from
Feb 8, 2024
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anwai98
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@anwai98 anwai98 commented Feb 3, 2024

I checked the scripts in detail, turns out, the self.decoder (the core decoder block) comes from UNet, which already makes use of (bilinear interpolation to scale + conv layer) to perform in-decoder upsampling. It's the features coming from encoder layer(s) which were still making use of convtranspose. Let's see how it works now.

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anwai98 commented Feb 6, 2024

We now have a modular setup, to exchange the upsampling logic (between bilinear interpolation or conv transpose)

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anwai98 commented Feb 8, 2024

@constantinpape GTG from my side! (as mentioned in computational-cell-analytics/micro-sam#379, the default UNETR now makes use of conv transpose)

@constantinpape constantinpape merged commit 3a443d2 into constantinpape:main Feb 8, 2024
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@anwai98 anwai98 deleted the u-unetr branch February 23, 2024 13:09
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