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Minor fix to adapt label conversion scripts for papila #312

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Jun 28, 2024
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Minor fix to adapt label conversion scripts for papila #312

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4 changes: 0 additions & 4 deletions torch_em/data/datasets/medical/papila.py
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Original file line number Diff line number Diff line change
Expand Up @@ -48,10 +48,6 @@ def _get_papila_paths(path, task, expert_choice, download):
image_paths = sorted(glob(os.path.join(data_dir, "FundusImages", "*.jpg")))

gt_dir = os.path.join(data_dir, "ground_truth")
if os.path.exists(gt_dir):
gt_paths = sorted(glob(os.path.join(gt_dir, f"*_{task}_{expert_choice}.tif")))
return image_paths, gt_paths

os.makedirs(gt_dir, exist_ok=True)

patient_ids = [Path(image_path).stem for image_path in image_paths]
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