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This generated a fulltext_html_urls.txt file with 22 urls
Not all pmids listed in fulltext_html_urls.txt had a corresponding fulltext.xml or fulltext.html file downloaded. Of the 22 urls with pmcids listed in the file, the breakdown of what I found was as follows:
20 of the pmcids had an empty dir
2 of the pmcids had a dir with a fulltext.xml file but an empty fulltext.html file
For each of the pmcids in the fulltext_html_urls.txt file, the output produced a message similar to the following one warn: Article with pmcid "PMC3381548" had no fulltext PDF url
The text was updated successfully, but these errors were encountered:
the fulltext HTML file is just a list of the fulltext HTML urls that were available. I'm moving it to an --html option so that users can request the HTML to be downloaded, and there will no longer be a fulltex_html_urls.txt file
What is the purpose of the file fulltext_html_urls.txt available as a part of the output?
Purpose: Search open access papers in eupmc for the query dinosaurs and download fulltext XMLs, supplementary files and fulltext PDFs if available
Query used
This generated a fulltext_html_urls.txt file with 22 urls
Not all pmids listed in fulltext_html_urls.txt had a corresponding fulltext.xml or fulltext.html file downloaded. Of the 22 urls with pmcids listed in the file, the breakdown of what I found was as follows:
warn: Article with pmcid "PMC3381548" had no fulltext PDF url
The text was updated successfully, but these errors were encountered: