add quicksilver (#12)

* add pennant
* add quicksilver

Signed-off-by: vsoch <vsoch@users.noreply.github.com>

.github/workflows/docker-builds.yaml

@@ -16,7 +16,9 @@ jobs:
                ["osu-benchmark", "ghcr.io/converged-computing/metric-osu-benchmark:latest"],
                ["fio", "ghcr.io/converged-computing/metric-fio:latest"],
                ["amg", "ghcr.io/converged-computing/metric-amg:latest"],
+               ["pennant", "ghcr.io/converged-computing/metric-pennant:latest"],
                ["qmcpack", "ghcr.io/converged-computing/metric-qmcpack:latest"],
+               ["quicksilver", "ghcr.io/converged-computing/metric-quicksilver:latest"],
                ["kripke", "ghcr.io/converged-computing/metric-kripke:latest"],
                ["nekbone", "ghcr.io/converged-computing/metric-nekbone:latest"],
                ["lammps", "ghcr.io/converged-computing/metric-lammps:latest"]] 

pennant/Dockerfile

@@ -0,0 +1,30 @@
+ARG tag=latest
+FROM ubuntu:${tag}
+ENV DEBIAN_FRONTEND=noninteractive
+
+# Example command
+# pennant /opt/pennant/test/sedovsmall/sedovsmall.pnt 
+
+RUN apt-get update && \
+    apt-get install -y fftw3-dev fftw3 pdsh libfabric-dev libfabric1 \
+        openssh-client openssh-server \
+        dnsutils telnet strace cmake git g++ \
+        mpich unzip bzip2
+
+WORKDIR /opt
+RUN git clone https://github.com/llnl/pennant
+WORKDIR /opt/pennant
+COPY ./Makefile /opt/pennant/Makefile
+RUN make && mv ./build/pennant /usr/bin/pennant
+
+# Hack for ssh for now...
+RUN echo "        LogLevel ERROR" >> /etc/ssh/ssh_config && \
+    echo "        StrictHostKeyChecking no" >> /etc/ssh/ssh_config && \
+    echo "        UserKnownHostsFile=/dev/null" >> /etc/ssh/ssh_config && \
+    cd /root && \
+    mkdir -p /run/sshd && \
+    ssh-keygen -t rsa -N "" -f /root/.ssh/id_rsa && chmod og+rX . && \
+    cd .ssh && cat id_rsa.pub > authorized_keys && chmod 644 authorized_keys
+
+EXPOSE 22
+WORKDIR /opt/pennant/test

pennant/Makefile

@@ -0,0 +1,79 @@
+BUILDDIR := build
+PRODUCT := pennant
+
+SRCDIR := src
+
+HDRS := $(wildcard $(SRCDIR)/*.hh)
+SRCS := $(wildcard $(SRCDIR)/*.cc)
+OBJS := $(SRCS:$(SRCDIR)/%.cc=$(BUILDDIR)/%.o)
+DEPS := $(SRCS:$(SRCDIR)/%.cc=$(BUILDDIR)/%.d)
+
+BINARY := $(BUILDDIR)/$(PRODUCT)
+
+# begin compiler-dependent flags
+#
+# gcc flags:
+CXX := g++
+CXXFLAGS_DEBUG := -g
+CXXFLAGS_OPT := -O3
+CXXFLAGS_OPENMP := -fopenmp
+
+# intel flags:
+#CXX := icpc
+#CXXFLAGS_DEBUG := -g
+#CXXFLAGS_OPT := -O3 -fast -fno-alias
+#CXXFLAGS_OPENMP := -openmp
+
+# pgi flags:
+#CXX := pgCC
+#CXXFLAGS_DEBUG := -g
+#CXXFLAGS_OPT := -O3 -fastsse
+#CXXFLAGS_OPENMP := -mp
+
+# end compiler-dependent flags
+
+# select optimized or debug
+CXXFLAGS := $(CXXFLAGS_OPT)
+#CXXFLAGS := $(CXXFLAGS_DEBUG)
+
+# add mpi to compile (comment out for serial build)
+# the following assumes the existence of an mpi compiler
+# wrapper called mpicxx
+CXX := mpicxx
+CXXFLAGS += -DUSE_MPI
+
+# add openmp flags (comment out for serial build)
+CXXFLAGS += $(CXXFLAGS_OPENMP)
+LDFLAGS += $(CXXFLAGS_OPENMP)
+
+LD := $(CXX)
+
+
+# begin rules
+all : $(BINARY)
+
+-include $(DEPS)
+
+$(BINARY) : $(OBJS)
+	@echo linking $@
+	$(maketargetdir)
+	$(LD) -o $@ $^ $(LDFLAGS)
+
+$(BUILDDIR)/%.o : $(SRCDIR)/%.cc
+	@echo compiling $<
+	$(maketargetdir)
+	$(CXX) $(CXXFLAGS) $(CXXINCLUDES) -c -o $@ $<
+
+$(BUILDDIR)/%.d : $(SRCDIR)/%.cc
+	@echo making depends for $<
+	$(maketargetdir)
+	@$(CXX) $(CXXFLAGS) $(CXXINCLUDES) -MM $< | sed "1s![^ \t]\+\.o!$(@:.d=.o) $@!" >$@
+
+define maketargetdir
+	-@mkdir -p $(dir $@) >/dev/null 2>&1
+endef
+
+.PHONY : clean
+clean :
+	rm -f $(BINARY) $(OBJS) $(DEPS)
+

quicksilver/Dockerfile

@@ -0,0 +1,54 @@
+ARG tag=latest
+FROM ubuntu:${tag}
+ENV DEBIAN_FRONTEND=noninteractive
+
+# Example command
+# qs /opt/quicksilver/Examples/CORAL2_Benchmark/Problem1/Coral2_P1.inp
+
+# All examples:
+# /opt/quicksilver/Examples/AllScattering/scatteringOnly.inp
+# /opt/quicksilver/Examples/NoCollisions/no.collisions.inp
+# /opt/quicksilver/Examples/NonFlatXC/NonFlatXC.inp
+# /opt/quicksilver/Examples/CORAL2_Benchmark/Problem2/Coral2_P2_4096.inp
+# /opt/quicksilver/Examples/CORAL2_Benchmark/Problem2/Coral2_P2.inp
+# /opt/quicksilver/Examples/CORAL2_Benchmark/Problem2/Coral2_P2_1.inp
+# /opt/quicksilver/Examples/CORAL2_Benchmark/Problem1/Coral2_P1.inp
+# /opt/quicksilver/Examples/CORAL2_Benchmark/Problem1/Coral2_P1_1.inp
+# /opt/quicksilver/Examples/CORAL2_Benchmark/Problem1/Coral2_P1_4096.inp
+# /opt/quicksilver/Examples/CTS2_Benchmark/CTS2.inp
+# /opt/quicksilver/Examples/CTS2_Benchmark/CTS2_36.inp
+# /opt/quicksilver/Examples/CTS2_Benchmark/CTS2_1.inp
+# /opt/quicksilver/Examples/AllAbsorb/allAbsorb.inp
+# /opt/quicksilver/Examples/Homogeneous/homogeneousProblem_v4_ts.inp
+# /opt/quicksilver/Examples/Homogeneous/homogeneousProblem_v5_ts.inp
+# /opt/quicksilver/Examples/Homogeneous/homogeneousProblem.inp
+# /opt/quicksilver/Examples/Homogeneous/homogeneousProblem_v3_wq.inp
+# /opt/quicksilver/Examples/Homogeneous/homogeneousProblem_v7_ts.inp
+# /opt/quicksilver/Examples/Homogeneous/homogeneousProblem_v4_tm.inp
+# /opt/quicksilver/Examples/Homogeneous/homogeneousProblem_v3.inp
+# /opt/quicksilver/Examples/AllEscape/allEscape.inp
+# /opt/quicksilver/Examples/NoFission/noFission.inp
+
+RUN apt-get update && \
+    apt-get install -y fftw3-dev fftw3 pdsh libfabric-dev libfabric1 \
+        openssh-client openssh-server \
+        dnsutils telnet strace cmake git g++ \
+        mpich unzip bzip2
+
+WORKDIR /opt
+RUN git clone https://github.com/LLNL/Quicksilver quicksilver
+COPY ./Makefile /opt/quicksilver/src/Makefile
+WORKDIR /opt/quicksilver/src
+RUN make && mv qs /usr/bin/qs
+
+# Hack for ssh for now...
+RUN echo "        LogLevel ERROR" >> /etc/ssh/ssh_config && \
+    echo "        StrictHostKeyChecking no" >> /etc/ssh/ssh_config && \
+    echo "        UserKnownHostsFile=/dev/null" >> /etc/ssh/ssh_config && \
+    cd /root && \
+    mkdir -p /run/sshd && \
+    ssh-keygen -t rsa -N "" -f /root/.ssh/id_rsa && chmod og+rX . && \
+    cd .ssh && cat id_rsa.pub > authorized_keys && chmod 644 authorized_keys
+
+EXPOSE 22
+WORKDIR /opt/quicksilver/Examples