Java package using http to query data from the National Center for Biotechnology Information(NCBI). Includes searches of sequences, pubmed, etc...as well as BLAST alignments. This package is meant to aid in the automation of queries to NCBI.
For more information about NCBI eutils, please visit http://www.ncbi.nlm.nih.gov/books/NBK25500/
See the src/com/algosome/eutils/examples/ for example usage of both ESearch and BLAST