removed old zika example, looks like iframe error on NBViewer

cornhundred · Jul 15, 2019 · 5c4a109 · 5c4a109
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diff --git a/docs/_build_html/.doctrees/case_studies.doctree b/docs/_build_html/.doctrees/case_studies.doctree
diff --git a/docs/_build_html/.doctrees/environment.pickle b/docs/_build_html/.doctrees/environment.pickle
diff --git a/docs/_build_html/_sources/case_studies.rst.txt b/docs/_build_html/_sources/case_studies.rst.txt
@@ -103,10 +103,6 @@ Clustergrammer was used to visualize several widely used machine learning Datase
 
 These examples demonstrate the generality of heatmap visualizations and enable users to interactively explore familiar Datasets.
 
-Zika Virus RNA-seq Data Visualization
-=====================================
-Clustergrammer was used to visualize the results of an RNA-Seq data analysis pipeline within a Jupyter notebook: `An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study`_ (`Wang et al.`_).
-
 
 .. _`Kinase Substrate Similarity Network`: https://maayanlab.github.io/kinase_substrate_similarity_network/
 .. _`MNIST Data`: http://yann.lecun.com/exdb/mnist/
@@ -118,14 +114,10 @@ Clustergrammer was used to visualize the results of an RNA-Seq data analysis pip
 .. _`Cell Signaling Technology Inc`: https://www.cellsignal.com/
 .. _`CCLE Explorer`: http://amp.pharm.mssm.edu/clustergrammer/CCLE/
 .. _`CCLE Jupyter Notebook`: http://nbviewer.jupyter.org/github/MaayanLab/CCLE_Clustergrammer/blob/master/notebooks/Clustergrammer_CCLE_Notebook.ipynb
-.. _`An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study`: http://nbviewer.jupyter.org/github/maayanlab/Zika-RNAseq-Pipeline/blob/master/Zika.ipynb
 .. _`Iris Flower Dataset`: http://nbviewer.jupyter.org/github/MaayanLab/iris_clustergrammer_visualization/blob/master/Iris%20Dataset.ipynb
 .. _`MNIST Notebook`: http://nbviewer.jupyter.org/github/MaayanLab/MNIST_heatmaps/blob/master/notebooks/MNIST_Notebook.ipynb
 .. _`MNIST Handwritten Digit Dataset`: http://nbviewer.jupyter.org/github/MaayanLab/MNIST_heatmaps/blob/master/notebooks/MNIST_Notebook.ipynb
-.. _`Single-Cell RNA-seq Data Visualization`: http://nbviewer.jupyter.org/github/MaayanLab/single_cell_RNAseq_Visualization/blob/master/Single%20Cell%20RNAseq%20Visualization%20Example.ipynb
 .. _`CCLE`: https://portals.broadinstitute.org/ccle/home
-.. _`Wang et al.`: https://f1000research.com/articles/5-1574/v1
-.. _`Olsson et al.`: http://www.nature.com/nature/journal/v537/n7622/full/nature19348.html
 .. _`USDA Nutrient Dataset`: http://nbviewer.jupyter.org/github/MaayanLab/USDA_Nutrients_Viz/blob/master/USDA_Nutrients.ipynb
 .. _`10X Genomics`: https://www.10xgenomics.com/resources/datasets/
 .. _`CIBERSORT`: https://cibersort.stanford.edu/

diff --git a/docs/_build_html/case_studies.html b/docs/_build_html/case_studies.html
@@ -96,7 +96,6 @@
 <li class="toctree-l2"><a class="reference internal" href="#cytof-data-single-cell-immune-response-to-pma-treatment">CyTOF Data: Single Cell Immune Response to PMA Treatment</a></li>
 <li class="toctree-l2"><a class="reference internal" href="#large-network-kinase-substrate-similarity-network">Large Network: Kinase Substrate Similarity Network</a></li>
 <li class="toctree-l2"><a class="reference internal" href="#machine-learning-and-miscellaneous-datasets">Machine Learning and Miscellaneous Datasets</a></li>
-<li class="toctree-l2"><a class="reference internal" href="#zika-virus-rna-seq-data-visualization">Zika Virus RNA-seq Data Visualization</a></li>
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="clustergrammer_web.html">Clustergrammer-Web</a></li>
@@ -253,10 +252,6 @@ <h2>Machine Learning and Miscellaneous Datasets<a class="headerlink" href="#mach
 </ul>
 <p>These examples demonstrate the generality of heatmap visualizations and enable users to interactively explore familiar Datasets.</p>
 </div>
-<div class="section" id="zika-virus-rna-seq-data-visualization">
-<h2>Zika Virus RNA-seq Data Visualization<a class="headerlink" href="#zika-virus-rna-seq-data-visualization" title="Permalink to this headline">¶</a></h2>
-<p>Clustergrammer was used to visualize the results of an RNA-Seq data analysis pipeline within a Jupyter notebook: <a class="reference external" href="http://nbviewer.jupyter.org/github/maayanlab/Zika-RNAseq-Pipeline/blob/master/Zika.ipynb">An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study</a> (<a class="reference external" href="https://f1000research.com/articles/5-1574/v1">Wang et al.</a>).</p>
-</div>
 </div>
 
 

diff --git a/docs/_build_html/index.html b/docs/_build_html/index.html
@@ -246,7 +246,6 @@ <h2>Contents:<a class="headerlink" href="#contents" title="Permalink to this hea
 <li class="toctree-l2"><a class="reference internal" href="case_studies.html#cytof-data-single-cell-immune-response-to-pma-treatment">CyTOF Data: Single Cell Immune Response to PMA Treatment</a></li>
 <li class="toctree-l2"><a class="reference internal" href="case_studies.html#large-network-kinase-substrate-similarity-network">Large Network: Kinase Substrate Similarity Network</a></li>
 <li class="toctree-l2"><a class="reference internal" href="case_studies.html#machine-learning-and-miscellaneous-datasets">Machine Learning and Miscellaneous Datasets</a></li>
-<li class="toctree-l2"><a class="reference internal" href="case_studies.html#zika-virus-rna-seq-data-visualization">Zika Virus RNA-seq Data Visualization</a></li>
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="clustergrammer_web.html">Clustergrammer-Web</a><ul>

diff --git a/docs/_build_html/searchindex.js b/docs/_build_html/searchindex.js
diff --git a/docs/case_studies.rst b/docs/case_studies.rst
@@ -103,10 +103,6 @@ Clustergrammer was used to visualize several widely used machine learning Datase
 
 These examples demonstrate the generality of heatmap visualizations and enable users to interactively explore familiar Datasets.
 
-Zika Virus RNA-seq Data Visualization
-=====================================
-Clustergrammer was used to visualize the results of an RNA-Seq data analysis pipeline within a Jupyter notebook: `An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study`_ (`Wang et al.`_).
-
 
 .. _`Kinase Substrate Similarity Network`: https://maayanlab.github.io/kinase_substrate_similarity_network/
 .. _`MNIST Data`: http://yann.lecun.com/exdb/mnist/
@@ -118,14 +114,10 @@ Clustergrammer was used to visualize the results of an RNA-Seq data analysis pip
 .. _`Cell Signaling Technology Inc`: https://www.cellsignal.com/
 .. _`CCLE Explorer`: http://amp.pharm.mssm.edu/clustergrammer/CCLE/
 .. _`CCLE Jupyter Notebook`: http://nbviewer.jupyter.org/github/MaayanLab/CCLE_Clustergrammer/blob/master/notebooks/Clustergrammer_CCLE_Notebook.ipynb
-.. _`An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study`: http://nbviewer.jupyter.org/github/maayanlab/Zika-RNAseq-Pipeline/blob/master/Zika.ipynb
 .. _`Iris Flower Dataset`: http://nbviewer.jupyter.org/github/MaayanLab/iris_clustergrammer_visualization/blob/master/Iris%20Dataset.ipynb
 .. _`MNIST Notebook`: http://nbviewer.jupyter.org/github/MaayanLab/MNIST_heatmaps/blob/master/notebooks/MNIST_Notebook.ipynb
 .. _`MNIST Handwritten Digit Dataset`: http://nbviewer.jupyter.org/github/MaayanLab/MNIST_heatmaps/blob/master/notebooks/MNIST_Notebook.ipynb
-.. _`Single-Cell RNA-seq Data Visualization`: http://nbviewer.jupyter.org/github/MaayanLab/single_cell_RNAseq_Visualization/blob/master/Single%20Cell%20RNAseq%20Visualization%20Example.ipynb
 .. _`CCLE`: https://portals.broadinstitute.org/ccle/home
-.. _`Wang et al.`: https://f1000research.com/articles/5-1574/v1
-.. _`Olsson et al.`: http://www.nature.com/nature/journal/v537/n7622/full/nature19348.html
 .. _`USDA Nutrient Dataset`: http://nbviewer.jupyter.org/github/MaayanLab/USDA_Nutrients_Viz/blob/master/USDA_Nutrients.ipynb
 .. _`10X Genomics`: https://www.10xgenomics.com/resources/datasets/
 .. _`CIBERSORT`: https://cibersort.stanford.edu/