updated MNIST links

cornhundred · May 3, 2017 · 6d48346 · 6d48346
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diff --git a/docs/_build_html/.doctrees/clustergrammer_widget.doctree b/docs/_build_html/.doctrees/clustergrammer_widget.doctree
diff --git a/docs/_build_html/.doctrees/environment.pickle b/docs/_build_html/.doctrees/environment.pickle
diff --git a/docs/_build_html/.doctrees/getting_started.doctree b/docs/_build_html/.doctrees/getting_started.doctree
diff --git a/docs/_build_html/.doctrees/index.doctree b/docs/_build_html/.doctrees/index.doctree
diff --git a/docs/_build_html/_images/jupyter_widget_nbviewer.png b/docs/_build_html/_images/jupyter_widget_nbviewer.png
diff --git a/docs/_build_html/_sources/clustergrammer_widget.txt b/docs/_build_html/_sources/clustergrammer_widget.txt
@@ -8,7 +8,7 @@ Clustergrammer Jupyter Widget
 
 Jupyter notebooks are ideal for generating reproducible workflows and analysis. They are also the best way to share Clustergrammer's interactive visualizations while providing context, analysis, and the underlying data to enable reproducibility (see :ref:`clustergrammer_widget_examples`). The Clustergrammer Widget enables users to easily produce interactive visualizations within a `Jupyter`_ notebook that can be shared with collaborators (using `nbviewer`_). Clustergrammer-Widget can be used to visualize a matrix of data from a file or from a `Pandas`_ DataFrame (see :ref:`matrix_format_io` for more information).
 
-Clustergrammer has been applied to visualize and analyze a wide variety of biological and non-biological data. See the Jupyter notebook examples below and :ref:`case_studies` for more information:
+Clustergrammer has been applied to a wide variety of biological and non-biological data. See the Jupyter notebook examples below and :ref:`case_studies` for more information:
 
 - `Running_clustergrammer_widget.ipynb`_
 - `DataFrame_Example.ipynb`_
@@ -158,7 +158,6 @@ Please :ref:`contact` Nicolas Fernandez and Avi Ma'ayan with questions or use th
 .. _`DataFrame_Example.ipynb`: http://nbviewer.jupyter.org/github/MaayanLab/clustergrammer-widget/blob/master/DataFrame_Example.ipynb
 
 
-.. _`Iris Dataset.ipynb`: http://nbviewer.jupyter.org/github/MaayanLab/iris_clustergrammer_visualization/blob/master/Iris%20Dataset.ipynb
 
 .. _`Pandas`: http://pandas.pydata.org/
 .. _`Numpy`: http://www.numpy.org/
@@ -174,10 +173,12 @@ Please :ref:`contact` Nicolas Fernandez and Avi Ma'ayan with questions or use th
 
 .. _`Single-Cell CyTOF Data`: http://nbviewer.jupyter.org/github/MaayanLab/Cytof_Plasma_PMA/blob/master/notebooks/Plasma_vs_PMA_Phosphorylation.ipynb
 
-.. _`MNIST Notebook`: http://nbviewer.jupyter.org/github/MaayanLab/MNIST_heatmaps/blob/master/notebooks/MNIST_Notebook.ipynb#Visualize-Downsampled-Version-of-MNIST
+.. _`MNIST Notebook`: http://nbviewer.jupyter.org/github/MaayanLab/MNIST_heatmaps/blob/master/notebooks/MNIST_Notebook.ipynb
 
 .. _`USDA Nutrient Dataset`: http://nbviewer.jupyter.org/github/MaayanLab/USDA_Nutrients_Viz/blob/master/USDA_Nutrients.ipynb
 
+.. _`Iris Dataset.ipynb`: http://nbviewer.jupyter.org/github/MaayanLab/iris_clustergrammer_visualization/blob/master/Iris%20Dataset.ipynb
+
 .. |pypi-version| image:: https://img.shields.io/pypi/v/clustergrammer_widget.svg
     :alt: pypi-version
     :scale: 100%

diff --git a/docs/_build_html/_sources/getting_started.txt b/docs/_build_html/_sources/getting_started.txt
@@ -148,6 +148,6 @@ Users can download and reproduce the example notebook, `Running_clustergrammer_w
 
 .. _`CCLE Jupyter Notebook`: http://nbviewer.jupyter.org/github/MaayanLab/CCLE_Clustergrammer/blob/master/notebooks/Clustergrammer_CCLE_Notebook.ipynb
 
-.. _`MNIST Notebook`: http://nbviewer.jupyter.org/github/MaayanLab/MNIST_heatmaps/blob/master/notebooks/MNIST_Notebook.ipynb#Visualize-Downsampled-Version-of-MNIST
+.. _`MNIST Notebook`: http://nbviewer.jupyter.org/github/MaayanLab/MNIST_heatmaps/blob/master/notebooks/MNIST_Notebook.ipynb
 
 .. _`USDA Nutrient Dataset`: http://nbviewer.jupyter.org/github/MaayanLab/USDA_Nutrients_Viz/blob/master/USDA_Nutrients.ipynb
diff --git a/docs/_build_html/_sources/index.txt b/docs/_build_html/_sources/index.txt
@@ -85,7 +85,7 @@ Contents:
 .. _`Kinase Substrate Similarity Network`: https://maayanlab.github.io/kinase_substrate_similarity_network/
 
 
-.. _`MNIST Notebook`: http://nbviewer.jupyter.org/github/MaayanLab/MNIST_heatmaps/blob/master/notebooks/MNIST_Notebook.ipynb#Visualize-Downsampled-Version-of-MNIST
+.. _`MNIST Notebook`: http://nbviewer.jupyter.org/github/MaayanLab/MNIST_heatmaps/blob/master/notebooks/MNIST_Notebook.ipynb
 
 .. _`USDA Nutrient Dataset`: http://nbviewer.jupyter.org/github/MaayanLab/USDA_Nutrients_Viz/blob/master/USDA_Nutrients.ipynb
 

diff --git a/docs/_build_html/clustergrammer_widget.html b/docs/_build_html/clustergrammer_widget.html
diff --git a/docs/_build_html/getting_started.html b/docs/_build_html/getting_started.html
@@ -204,7 +204,7 @@ <h2>Interacting with Clustergrammer Heatmaps<a class="headerlink" href="#interac
 <li><a class="reference external" href="http://nbviewer.jupyter.org/github/MaayanLab/CCLE_Clustergrammer/blob/master/notebooks/Clustergrammer_CCLE_Notebook.ipynb">CCLE Jupyter Notebook</a></li>
 <li><a class="reference external" href="http://nbviewer.jupyter.org/github/MaayanLab/CST_Lung_Cancer_Viz/blob/master/notebooks/CST_Data_Viz.ipynb">Lung Cancer PTM and Gene Expression Regulation</a></li>
 <li><a class="reference external" href="http://nbviewer.jupyter.org/github/MaayanLab/Cytof_Plasma_PMA/blob/master/notebooks/Plasma_vs_PMA_Phosphorylation.ipynb">Single-Cell CyTOF Data</a></li>
-<li><a class="reference external" href="http://nbviewer.jupyter.org/github/MaayanLab/MNIST_heatmaps/blob/master/notebooks/MNIST_Notebook.ipynb#Visualize-Downsampled-Version-of-MNIST">MNIST Notebook</a></li>
+<li><a class="reference external" href="http://nbviewer.jupyter.org/github/MaayanLab/MNIST_heatmaps/blob/master/notebooks/MNIST_Notebook.ipynb">MNIST Notebook</a></li>
 <li><a class="reference external" href="http://nbviewer.jupyter.org/github/MaayanLab/USDA_Nutrients_Viz/blob/master/USDA_Nutrients.ipynb">USDA Nutrient Dataset</a></li>
 <li><a class="reference external" href="http://nbviewer.jupyter.org/github/MaayanLab/iris_clustergrammer_visualization/blob/master/Iris%20Dataset.ipynb">Iris Dataset.ipynb</a></li>
 </ul>
@@ -229,7 +229,7 @@ <h2>Interacting with Clustergrammer Heatmaps<a class="headerlink" href="#interac
 </div>
 <p>See the screenshot below for an example widget visualization:</p>
 <div class="figure align-left" id="id4">
-<a class="reference external image-reference" href="http://nbviewer.jupyter.org/github/MaayanLab/clustergrammer-widget/blob/master/Running_clustergrammer_widget.ipynb"><img alt="Jupyter Widget NBViewer" src="_static/jupyter_widget_nbviewer.png" style="width: 900px;" /></a>
+<a class="reference external image-reference" href="http://nbviewer.jupyter.org/github/MaayanLab/clustergrammer-widget/blob/master/Running_clustergrammer_widget.ipynb"><img alt="Jupyter Widget NBViewer" src="_images/jupyter_widget_nbviewer.png" style="width: 900px;" /></a>
 <p class="caption"><span class="caption-text">Clustergrammer can be used as an interactive widget within a Jupyter notebook and shared using nbviewer (see <a class="reference external" href="http://nbviewer.jupyter.org/github/MaayanLab/clustergrammer-widget/blob/master/Running_clustergrammer_widget.ipynb">Running_clustergrammer_widget.ipynb</a> example).</span></p>
 </div>
 <p>Users can download and reproduce the example notebook, <a class="reference external" href="http://nbviewer.jupyter.org/github/MaayanLab/clustergrammer-widget/blob/master/Running_clustergrammer_widget.ipynb">Running_clustergrammer_widget.ipynb</a>, by cloning its <a class="reference external" href="https://github.com/MaayanLab/clustergrammer-widget">GitHub repo</a>. For more information about using the widget (e.g. visualizing data from a Pandas DataFrame and sharing notebooks) see <a class="reference internal" href="clustergrammer_widget.html#clustergrammer-widget"><span class="std std-ref">Clustergrammer Jupyter Widget</span></a>.</p>

diff --git a/docs/_build_html/index.html b/docs/_build_html/index.html
@@ -162,7 +162,7 @@ <h2>Case Studies and Examples<a class="headerlink" href="#case-studies-and-examp
 <li><a class="reference external" href="http://nbviewer.jupyter.org/github/MaayanLab/CST_Lung_Cancer_Viz/blob/master/notebooks/CST_Data_Viz.ipynb">Lung Cancer PTM and Gene Expression Regulation</a></li>
 <li><a class="reference external" href="http://nbviewer.jupyter.org/github/MaayanLab/Cytof_Plasma_PMA/blob/master/notebooks/Plasma_vs_PMA_Phosphorylation.ipynb">Single-Cell CyTOF Data</a></li>
 <li><a class="reference external" href="https://maayanlab.github.io/kinase_substrate_similarity_network/">Kinase Substrate Similarity Network</a></li>
-<li><a class="reference external" href="http://nbviewer.jupyter.org/github/MaayanLab/MNIST_heatmaps/blob/master/notebooks/MNIST_Notebook.ipynb#Visualize-Downsampled-Version-of-MNIST">MNIST Notebook</a></li>
+<li><a class="reference external" href="http://nbviewer.jupyter.org/github/MaayanLab/MNIST_heatmaps/blob/master/notebooks/MNIST_Notebook.ipynb">MNIST Notebook</a></li>
 <li><a class="reference external" href="http://nbviewer.jupyter.org/github/MaayanLab/iris_clustergrammer_visualization/blob/master/Iris%20Dataset.ipynb">Iris Flower Dataset</a></li>
 <li><a class="reference external" href="http://nbviewer.jupyter.org/github/MaayanLab/USDA_Nutrients_Viz/blob/master/USDA_Nutrients.ipynb">USDA Nutrient Dataset</a></li>
 </ul>

diff --git a/docs/_build_html/searchindex.js b/docs/_build_html/searchindex.js
diff --git a/docs/clustergrammer_widget.rst b/docs/clustergrammer_widget.rst
@@ -8,7 +8,7 @@ Clustergrammer Jupyter Widget
 
 Jupyter notebooks are ideal for generating reproducible workflows and analysis. They are also the best way to share Clustergrammer's interactive visualizations while providing context, analysis, and the underlying data to enable reproducibility (see :ref:`clustergrammer_widget_examples`). The Clustergrammer Widget enables users to easily produce interactive visualizations within a `Jupyter`_ notebook that can be shared with collaborators (using `nbviewer`_). Clustergrammer-Widget can be used to visualize a matrix of data from a file or from a `Pandas`_ DataFrame (see :ref:`matrix_format_io` for more information).
 
-Clustergrammer has been applied to visualize and analyze a wide variety of biological and non-biological data. See the Jupyter notebook examples below and :ref:`case_studies` for more information:
+Clustergrammer has been applied to a wide variety of biological and non-biological data. See the Jupyter notebook examples below and :ref:`case_studies` for more information:
 
 - `Running_clustergrammer_widget.ipynb`_
 - `DataFrame_Example.ipynb`_
@@ -158,7 +158,6 @@ Please :ref:`contact` Nicolas Fernandez and Avi Ma'ayan with questions or use th
 .. _`DataFrame_Example.ipynb`: http://nbviewer.jupyter.org/github/MaayanLab/clustergrammer-widget/blob/master/DataFrame_Example.ipynb
 
 
-.. _`Iris Dataset.ipynb`: http://nbviewer.jupyter.org/github/MaayanLab/iris_clustergrammer_visualization/blob/master/Iris%20Dataset.ipynb
 
 .. _`Pandas`: http://pandas.pydata.org/
 .. _`Numpy`: http://www.numpy.org/
@@ -174,10 +173,12 @@ Please :ref:`contact` Nicolas Fernandez and Avi Ma'ayan with questions or use th
 
 .. _`Single-Cell CyTOF Data`: http://nbviewer.jupyter.org/github/MaayanLab/Cytof_Plasma_PMA/blob/master/notebooks/Plasma_vs_PMA_Phosphorylation.ipynb
 
-.. _`MNIST Notebook`: http://nbviewer.jupyter.org/github/MaayanLab/MNIST_heatmaps/blob/master/notebooks/MNIST_Notebook.ipynb#Visualize-Downsampled-Version-of-MNIST
+.. _`MNIST Notebook`: http://nbviewer.jupyter.org/github/MaayanLab/MNIST_heatmaps/blob/master/notebooks/MNIST_Notebook.ipynb
 
 .. _`USDA Nutrient Dataset`: http://nbviewer.jupyter.org/github/MaayanLab/USDA_Nutrients_Viz/blob/master/USDA_Nutrients.ipynb
 
+.. _`Iris Dataset.ipynb`: http://nbviewer.jupyter.org/github/MaayanLab/iris_clustergrammer_visualization/blob/master/Iris%20Dataset.ipynb
+
 .. |pypi-version| image:: https://img.shields.io/pypi/v/clustergrammer_widget.svg
     :alt: pypi-version
     :scale: 100%

diff --git a/docs/getting_started.rst b/docs/getting_started.rst
@@ -148,6 +148,6 @@ Users can download and reproduce the example notebook, `Running_clustergrammer_w
 
 .. _`CCLE Jupyter Notebook`: http://nbviewer.jupyter.org/github/MaayanLab/CCLE_Clustergrammer/blob/master/notebooks/Clustergrammer_CCLE_Notebook.ipynb
 
-.. _`MNIST Notebook`: http://nbviewer.jupyter.org/github/MaayanLab/MNIST_heatmaps/blob/master/notebooks/MNIST_Notebook.ipynb#Visualize-Downsampled-Version-of-MNIST
+.. _`MNIST Notebook`: http://nbviewer.jupyter.org/github/MaayanLab/MNIST_heatmaps/blob/master/notebooks/MNIST_Notebook.ipynb
 
 .. _`USDA Nutrient Dataset`: http://nbviewer.jupyter.org/github/MaayanLab/USDA_Nutrients_Viz/blob/master/USDA_Nutrients.ipynb
diff --git a/docs/index.rst b/docs/index.rst
@@ -85,7 +85,7 @@ Contents:
 .. _`Kinase Substrate Similarity Network`: https://maayanlab.github.io/kinase_substrate_similarity_network/
 
 
-.. _`MNIST Notebook`: http://nbviewer.jupyter.org/github/MaayanLab/MNIST_heatmaps/blob/master/notebooks/MNIST_Notebook.ipynb#Visualize-Downsampled-Version-of-MNIST
+.. _`MNIST Notebook`: http://nbviewer.jupyter.org/github/MaayanLab/MNIST_heatmaps/blob/master/notebooks/MNIST_Notebook.ipynb
 
 .. _`USDA Nutrient Dataset`: http://nbviewer.jupyter.org/github/MaayanLab/USDA_Nutrients_Viz/blob/master/USDA_Nutrients.ipynb